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2012

  1. A Gusev, PF Palamara, G Aponte, Z Zhuang, A Darvasi, P Gregersen , I Pe'er (2012), "The architecture of long-range haplotypes shared within and across populations", Molecular Biology and Evolution, to appear.

  2. X Hu, T Laragione , L Sun, S Koshy, KR Jones, II Ismailov, P Yotnda, FT Horrigan, PS Gulko, C Beeton (2012), "KCa1.1 potassium channels regulate key pro-inflammatory and invasive properties of fibroblast-like synoviocytes in rheumatoid arthritis", Journal of Biological Chemistry, to appear.

  3. E Jenkins, M Brenner, T Laragione, PS Gulko (2012), "Synovial expression of Th17-related and cancer-associated genes is regulated by the arthritis severity locus Cia10", Genes and Immunity, to appear.

  4. T Laragione, A Shah, PS Gulko (2012), "The vitamin D receptor regulates rheumatoid arthritis synovial fibroblast invasion and morphology", Molecular Medicine, to appear.

  5. Wentian Li (2012), "Menzerath's law at the gene-exon level in the human genome", Complexity, to appear.
    [ abstract]

  6. Wentian Li (2012), "Fitting Chinese syllable-to-character mapping spectrum by the beta rank function", Physica A, 391:1515-1518.
    [ abstract]

  7. EA Perkins, D Landis, ZL Causey Mph, Y Edberg, RJ Reynolds, LB Hughes; CLEAR Investigators, Peter K Gregersen , RP Kimberly, JC Edberg, SL Bridges Jr. (2010), "Association of single nucleotide polymorphisms (SNPs) in CCR6, TAGAP and TNFAIP3 with rheumatoid arthritis in African Americans", Arthritis & Rheumatism, to appear.

  8. Ernesto Prado Montes de Oca, Wentian Li (2012), "Human beta-defensin 1 (DEFB1) alleles and genotypes frequencies probably impacts atopic dermatitis ethnic susceptibility" (correspondence), International Journal of Dermatology, to appear.
2011

  1. I Adrianto, Wen F, Templeton A, Wiley G, King JB, Lessard CJ, Bates JS, Hu Y, Kelly JA, Kaufman KM, Guthridge JM, Alarcón-Riquelme ME; BIOLUPUS and GENLES Networks, Anaya JM, Bae SC, Bang SY, Boackle SA, Brown EE, Petri MA, Gallant C, Ramsey-Goldman R, Reveille JD, Vila LM, Criswell LA, Edberg JC, Freedman BI, Peter K Gregersen , Gilkeson GS, Jacob CO, James JA, Kamen DL, Kimberly RP, Martin J, Merrill JT, Niewold TB, Park SY, Pons-Estel BA, Scofield RH, Stevens AM, Tsao BP, Vyse TJ, Langefeld CD, Harley JB, Moser KL, Webb CF, Humphrey MB, Montgomery CG, Gaffney PM. (2011), "Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus", Nature Genetics, 43(3):253-258.

  2. D Bagnara, Kaufman MS, Calissano C, Marsilio S, Patten PE, Simone R, Chum P, Yan XJ, Allen SL, Kolitz JE, Baskar S, Rader C, Mellstedt H, Rabbani H, Annette Lee, Peter K Gregersen , Rai KR, Chiorazzi N (2011), "A novel adoptive transfer model of chronic lymphocytic leukemia suggests a key role for T lymphocytes in the disease", Blood, 117(20):5463-5472.

  3. G Borck, Kakar N, Hoch J, Friedrich K, Jan Freudenberg , Nürnberg G, Yilmaz R, Daud S, Baloch DM, Nürnberg P, Oldenburg J, Ahmad J, Kubisch C (2011), "An Alu repeat-mediated genomic GCNT2 deletion underlies congenital cataracts and adult i blood group", Human Genetics, to appear.
    [ abstract]

  4. Max Brenner, Teresina Laragione, A Shah, A Mello, EF Remmers, RL Wilder, Percio S Gulko (2011), "Identification of two new arthritis severity loci that regulate levels of autoantibodies, IL-1beta and joint damage", Arthritis & Rheumatism, to appear.
    [ abstract]

  5. Max Brenner, Carl Petrus Linge, Wentian Li, Percio S Gulko (2011), "Increased synovial expression of nuclear receptors correlates with arthritis protect ion: a possible novel mechanism of articular homeostasis (regulated by Cia25)", Arthritis & Rheumatism, 63(10):2918-2929.
    [ abstract]

  6. PG Bronson, Ramsay PP, Seldin MF, Peter K Gregersen , Criswell LA, Barcellos LF (2011), "CIITA is not associated with risk of developing rheumatoid arthritis", Genes and Immunity, 12(3):235-238.

  7. Calissano C, Damle RN, Marsilio S, Yan XJ, Yancopoulos S, Hayes G, Emson C, Murphy EJ, Hellerstein MK, Sison C, Kaufman MS, Kolitz JE, Allen SL, Rai KR, Ivanovic I, Dozmorov IM, Roa S, Scharff MD, Wentian Li , Chiorazzi N (2011), "Intra-clonal complexity in chronic lymphocytic leukemia: fractions enriched in recently born/divided and older/quiescent cells", Molecular Medicine, 17:1374-1382.
    [PDF]

  8. R Chen, Stahl EA, Kurreeman FA, Peter K Gregersen , Siminovitch KA, Worthington J, Padyukov L, Raychaudhuri S, Plenge RM (2011), "Fine mapping the TAGAP risk locus in rheumatoid arthritis", Genes and Immunity, 12(4):314-318.

  9. Judy H Cho, Peter K Gregersen (2011) "Genomics and the multifactorial nature of human autoimmune disease", New England Journal of Medicine, 365(17):1612-1623.

  10. BD Chung, Kayserili H, Ai M, Jan Freudenberg , Uzümcü A, Uyguner O, Bartels CF, Höning S, Ramirez A, Hanisch FG, Nürnberg G, Nürnberg P, Warman ML, Wollnik B, Kubisch C, Netzer C (2009), "A mutation in the signal sequence of LRP5 in a family with an osteoporosis-pseudoglioma syndrome (OPPG)-like phenotype indicates a novel disease mechanism for trinucleotide repeats", Human Mutation, 30(4):641-648.

  11. H Chun, David Ballard , Cho J, Zhao H (2011), "Identification of association between disease and multiple markers via sparse partial least-squares regression", Genetic Epidemiology, 35(6):479-486.
    [ abstract]

  12. SA Chung, Taylor KE, Graham RR, Nititham J, Annette T Lee , Ortmann WA, Jacob CO, Alarcón-Riquelme ME, Tsao BP, Harley JB, Gaffney PM, Moser KL; SLEGEN, Petri M, Demirci FY, Kamboh MI, Manzi S, Peter K Gregersen , Langefeld CD, Behrens TW, Criswell LA (2011), "Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production", PLoS Genetics, 7(3):e1001323.

  13. TN Ferraro, Smith GG, David Ballard , Zhao H, Schwebel CL, Gupta A, Rappaport EF, Ruiz SE, Lohoff FW, Doyle GA, Berrettini WH, Buono RJ. (2011), "Quantitative trait loci for electrical seizure threshold mapped in C57BLKS/J and C57BL/10SnJ mic", Genes, Brain and Behavior, 10(3):309-315.
    [ abstract]

  14. Jan Freudenberg , Lee HS, Han BG, Shin HD, Kang YM, Sung YK, Shim SC, Choi CB, Annette T Lee, Peter K Gregersen , Bae SC. (2011), "Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci", Arthritis & Rheumatism, 63(4):884-893.
    [ abstract]

  15. O Gorlova, Martin JE, Rueda B, Koeleman BP, Ying J, Teruel M, Diaz-Gallo LM, Broen JC, Vonk MC, Simeon CP, Alizadeh BZ, Coenen MJ, Voskuyl AE, Schuerwegh AJ, van Riel PL, Vanthuyne M, van 't Slot R, Italiaander A, Ophoff RA, Hunzelmann N, Fonollosa V, Ortego-Centeno N, González-Gay MA, García-Hernández FJ, González-Escribano MF, Airo P, van Laar J, Worthington J, Hesselstrand R, Smith V, de Keyser F, Houssiau F, Chee MM, Madhok R, Shiels PG, Westhovens R, Kreuter A, de Baere E, Witte T, Padyukov L, Nordin A, Scorza R, Lunardi C, Lie BA, Hoffmann-Vold AM, Palm O, García de la Peńa P, Carreira P; Spanish Scleroderma Group, Varga J, Hinchcliff M, Annette T Lee , Gourh P, Amos CI, Wigley FM, Hummers LK, Hummers J, Nelson JL, Riemekasten G, Herrick A, Beretta L, Fonseca C, Denton CP, Peter KGregersen , Agarwal S, Assassi S, Tan FK, Arnett FC, Radstake TR, Mayes MD, Martin J (2011), "Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy", PLoS Genetics, 7(7):e1002178.

  16. R Kosoy, M Ransom, H Chen, M Marconi, F Macciardi, N Glorioso, Peter K Gregersen , D Cusi, MF Seldin (2011), "Evidence for malaria selection of a CR1 haplotype in Sardinia", Genes and Immunity, 12(7):582-588.
    [ abstract]

  17. Teresina Laragione, Max Brenner, B Sherry, Percio S Gulko (2011), "CXCL10 and its receptor CXCR3 regulate synovial fibroblast invasion in rheumatoid arthritis", Arthritis & Rheumatism, 63(11):3247-3283.
    [ abstract]

  18. CJ Lessard, Adrianto I, Kelly JA, Kaufman KM, Grundahl KM, Adler A, Williams AH, Gallant CJ; Marta E. Alarcón-Riquelme on behalf of the BIOLUPUS and GENLES Networks, Anaya JM, Bae SC, Boackle SA, Brown EE, Chang DM, Criswell LA, Edberg JC, Freedman BI, Peter K Gregersen , Gilkeson GS, Jacob CO, James JA, Kamen DL, Kimberly RP, Martin J, Merrill JT, Niewold TB, Park SY, Petri MA, Pons-Estel BA, Ramsey-Goldman R, Reveille JD, Song YW, Stevens AM, Tsao BP, Vila LM, Vyse TJ, Yu CY, Guthridge JM, Bruner GR, Langefeld CD, Montgomery C, Harley JB, Scofield RH, Gaffney PM, Moser KL (2011), "Identification of a systemic lupus erythematosus susceptibility locus at 11p13 between PDHX and CD44 in a multiethnic study", American Journal of Human Genetics, 88(1):83-91.

  19. Wentian Li (2011), "On parameters of the human genome", Journal of Theoretical Biology, 288(7):92-104.
    [ abstract] [PDF (aam)]

  20. Wentian Li, Chunsheng He, Jan Freudenberg (2011), "A mathematical framework for examining whether a minimum number of chiasmata is required per metacentric chromosome or chromosome arm in human", Genomics, 97(3):186-192.
    [ abstract]

  21. Wentian Li, Pedro Miramontes (2011), "Fitting ranked English and Spanish letter frequency distribution in U.S. and Mexican presidential speeches", Journal of Quantitative Linguistics, 18(4):337-358.
    [ abstract]

  22. M Liu, L Rogers, Q Cheng, Y Shao, ME Fernandez-Beros, JN Hirschhorn, HN Lyon, ZK Gajdos, S Vedantam, Peter Gregersen , MF Seldin, B Bleck, A Ramasamy, AL Hartikainen, MR Jarvelin, M Kuokkanen, T Laitinen, J Eriksson, T Lehtimäk , OT Raitakari, J Reibman (2011), "Genetic variants of TSLP and asthma in an admixed urban population", PLoS One, 6(9):e25099.

  23. L Menard, D Saadoun, I Isnardi, YS Ng, G Meyers, C Massad, C Price, C Abraham, R Motaghedi, JH Buckner, Peter K Gregersen , E Meffre (2011), "The PTPN22 allele encoding an R620W variant interferes with the removal of developing autoreactive B cells in humans", Journal of Clinical Investigation, to appear.
    [ abstract]

  24. K Panoutsopoulou, Southam L, Elliott KS, Wrayner N, Zhai G, Beazley C, Thorleifsson G, Arden NK, Carr A, Chapman K, Deloukas P, Doherty M, McCaskie A, Ollier WE, Ralston SH, Spector TD, Valdes AM, Wallis GA, Wilkinson JM, Arden E, Battley K, Blackburn H, Blanco FJ, Bumpstead S, Cupples LA, Day-Williams AG, Dixon K, Doherty SA, Esko T, Evangelou E, Felson D, Gomez-Reino JJ, Gonzalez A, Gordon A, Gwilliam R, Halldorsson BV, Hauksson VB, Hofman A, Hunt SE, Ioannidis JP, Ingvarsson T, Jonsdottir I, Jonsson H, Keen R, Kerkhof HJ, Kloppenburg MG, Koller N, Lakenberg N, Lane NE, Annette T Lee , Metspalu A, Meulenbelt I, Nevitt MC, O'Neill F, Parimi N, Potter SC, Rego-Perez I, Riancho JA, Sherburn K, Slagboom PE, Stefansson K, Styrkarsdottir U, Sumillera M, Swift D, Thorsteinsdottir U, Tsezou A, Uitterlinden AG, van Meurs JB, Watkins B, Wheeler M, Mitchell S, Zhu Y, Zmuda JM; arcOGEN Consortium, Zeggini E, Loughlin J (2011), "Insights into the genetic architecture of osteoarthritis from stage 1 of the arcOGEN study", Annals of the Rheumatic Diseases, 70(5):864-867.

  25. RM Plenge, S Louis Bridges Jr, TW Huizinga, LA Criswell, Peter K Gregersen (2011), "Recommendations for publication of genetic association studies in arthritis & rheumatism", Arthritis & Rheumatism, to appear.
    [ abstract]

  26. R Ramanujam, F Piehl, R Pirskanen, Peter K Gregersen , L Hammarström (2011), "Concomitant autoimmunity in myasthenia gravis - Lack of association with IgA deficiency", Journal of Neuroimmunology, 236(1-2):118-122.

  27. JJ Song, I Hwang, KH Cho, MA Garcia, AJ Kim, TH Wang, TM Lindstrom, Annette T Lee, T Nishimura, L Zhao, J Morser, M Nesheim, SB Goodman, DM Lee, SL Bridges Jr, Peter K Gregersen , LL Leung, WH Robinson (2011), "Plasma carboxypeptidase B downregulates inflammatory responses in autoimmune arthritis", Journal of Clinical Investigation, to appear.
    [ abstract]

  28. KE Taylor, Chung SA, Graham RR, Ortmann WA, Annette T Lee , Langefeld CD, Jacob CO, Kamboh MI, Alarcón-Riquelme ME, Tsao BP, Moser KL, Gaffney PM, Harley JB, Petri M, Manzi S, Peter K Gregersen , Behrens TW, Criswell LA (2011), "Risk alleles for systemic lupus erythematosus in a large case-control collection and associations with clinical subphenotypes", PLoS Genetics, 7(2):e1001311.

  29. N Wang, Shen N, Vyse TJ, Anand V, Gunnarson I, Sturfelt G, Rantapää-Dahlqvist S, Elvin K, Truedsson L, Andersson BA, Dahle C, Ortqvist E, Peter K Gregersen , Behrens TW, Hammarström L. (2011), "Selective IgA deficiency in autoimmune diseases", Molecular Medicine, 17(11-12):1383-1396.
    [PDF]

  30. Xiao-Jie Yan, Igor Dozmorov, Wentian Li, Sophia Yancopoulos, Cristina Sison, Michael Centola, Preetesh Jain, Steven L Allen, Jonathan E Kolitz, Kanti R Rai, Nicholas Chiorazzi, Barbara Sherry (2011), "Identification of outcome-correlated cytokine clusters in chronic lymphocytic leukemia", Blood, 118(19):5201-5210.
    [ abstract]

  31. Yaning Yang, Elaine F Remmers, Chukwuma B Ogunwole, Daniel L Katner, Peter K Gregersen, Wentian Li (2011), "Effective sample size: quick estimation of the effect of related samples in genetic case-control association analyses", Computational Biology and Chemistry, 35:40-49.
    [ abstract]

  32. Y Zhang, Lin X, Koga K, Takahashi K, HM Linge, A Mello, T Laragione, PS Gulko , EJ Miller (2011), "Strain differences in alveolar neutrophil infiltration and macrophage phenotypes in an acute lung inflammation model", Molecular Medicine, 17(7-8):780-789.
    [ abstract]

  33. A Zhernakova, Stahl EA, Trynka G, Raychaudhuri S, Festen EA, Franke L, Westra HJ, Fehrmann RS, Kurreeman FA, Thomson B, Gupta N, Romanos J, McManus R, Ryan AW, Turner G, Brouwer E, Posthumus MD, Remmers EF, Tucci F, Toes R, Grandone E, Mazzilli MC, Rybak A, Cukrowska B, Coenen MJ, Radstake TR, van Riel PL, Li Y, de Bakker PI, Peter K Gregersen , Worthington J, Siminovitch KA, Klareskog L, Huizinga TW, Wijmenga C, Plenge RM. (2011), "Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci", PLoS Genetics, 7(2):e1002004.
2010

  1. David Ballard, Abraham C, Cho J, Zhao H (2010), "Pathway analysis comparison using Crohn's disease genome wide association studies", BMC Medical Genomics, 3:25.
    [ abstract]

  2. David H Ballard, Judy Cho, Hongyu Zhao (2010), "Comparisons of multi-marker association methods to detect association between a candidate region and disease", Genetic Epidemiology, 34(3):201-212.
    [ abstract]

  3. FB Briggs, PP Ramsay, E Madden, JM Norris, VM Holers, TR Mikuls, T Sokka, MF Seldin, Peter K Gregersen , LA Criswell, LF Barcellos (2010), "Supervised machine learning and logistic regression identifies novel epistatic risk factors with PTPN22 for rheumatoid arthritis", Genes and Immunity, 11(3):199-208.

  4. PG Bronson, PP Ramsay, MF Seldin, Peter K Gregersen , LA Criswell, LF Barcellos (2010), "A candidate gene study of CLEC16A does not provide evidence of association with risk for anti-CCP-positive rheumatoid arthritis", Genes and Immunity, 11(6):504-508.

  5. BA Cree, JD Rioux, JL McCauley, PA Gourraud, P Goyette, J McElroy, P De Jager, A Santaniello, TJ Vyse, Peter K Gregersen , D Mirel, DA Hafler, JL Haines, MA Pericak-Vance, A Compston, SJ Sawcer, JR Oksenberg, SL Hauser; IMAGEN; IMSGC (2010), "A major histocompatibility class I locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1*15:01", PLoS ONE, 5(6):e11296.

  6. J Cui, S Saevarsdottir, B Thomson, L Padyukov, AH Van der Helm-van Mil, J Nititham, LB Hughes, N de Vries, S Raychaudhuri, L Alfredsson, J Askling, S Wedrén, B Ding, C Guiducci, GJ Wolbink, JB Crusius, IE Van der Horst-Bruinsma, M Herenius, ME Weinblatt, NA Shadick, J Worthington, Franak Batliwalla, Marlena Kern, AW Morgan, AG Wilson, JD Isaacs, K Hyrich, MF Seldin, LW Moreland, TW Behrens, CF Allaart, LA Criswell, TW Huizinga, PP Tak, SL Bridges Jr, RE Toes, A Barton, L Klareskog, Peter K Gregersen , EW Karlson, RM Plenge (2010), "Rheumatoid arthritis risk allele PTPRC is also associated with response to anti-tumor necrosis factor alpha therapy", Arthritis & Rheumatism, 62(7):1849-1861.

  7. RC Ferreira, Q Pan-Hammarström, RR Graham, V Gateva, G Fontán, Aneette T Lee , W Ortmann, E Urcelay, M Fernández-Arquero, C Núńez, G Jorgensen, BR Ludviksson, S Koskinen, K Haimila, HF Clark, L Klareskog, Peter K Gregersen , TW Behrens, L Hammarström (2010), "Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency", Nature Genetics, 42(9):777-780.

  8. Jan Freudenberg, Annette T Lee , KA Siminovitch, CI Amos, David Ballard, Wentian Li, Peter K Gregersen (2010), "Locus category based analysis of a large genome-wide association study of rheumatoid arthritis", Human Molecular Genetics, 19(19):3863-3872.

  9. Peter K Gregersen (2010), "Susceptibility genes for rheumatoid arthritis - a rapidly expanding harvest", Bulletin of the NYU Hospital for Joint Diseases, 68(3):179-182.

  10. GM Hirschfield, X Liu, Y Han, IP Gorlov, Y Lu, C Xu, Y Lu, W Chen, BD Juran, C Coltescu, AL Mason, P Milkiewicz, RP Myers, JA Odin, VA Luketic, D Speiciene, C Vincent, C Levy, Peter K Gregersen , J Zhang, EJ Heathcote, KN Lazaridis, CI Amos, KA Siminovitch (2010), "Variants at IRF5-TNPO3, 17q12-21 and MMEL1 are associated with primary biliary cirrhosis", Nature Genetics, 42(8):655-657.

  11. L Klareskog, Peter K Gregersen , TW Huizinga (2010), "Prevention of autoimmune rheumatic disease: state of the art and future perspectives", Annals of the Rheumatic Diseases, 69(12):2062-2066.

  12. Teresina Laragione, Percio S Gulko (2010), "mTOR regulates the invasive properties of synovial fibroblasts in rheumatoid arthritis", Molecular Medicine, 16(9-10):352-358.

  13. Wentian Li, Pedro Miramontes, Germinal Cocho (2010), "Fitting ranked linguistic data with two-parameter functions", Entropy, 12(7):1743-1764.
    [PDF]

  14. X Liu, P Invernizzi, Y Lu, R Kosoy, Y Lu, I Bianchi, M Podda, C Xu, G Xie, F Macciardi, C Selmi, S Lupoli, R Shigeta, M Ransom, A Lleo, Annette T Lee , AL Mason, RP Myers, KM Peltekian, CN Ghent, F Bernuzzi, M Zuin, F Rosina, E Borghesio, A Floreani, R Lazzari, G Niro, A Andriulli, L Muratori, P Muratori, PL Almasio, P Andreone, M Margotti, M Brunetto, B Coco, D Alvaro, MC Bragazzi, F Marra, A Pisano, C Rigamonti, M Colombo, M Marzioni, A Benedetti, L Fabris, M Strazzabosco, P Portincasa, VO Palmieri, C Tiribelli, L Croce, S Bruno, S Rossi, M Vinci, C Prisco, A Mattalia, P Toniutto, A Picciotto, A Galli, C Ferrari, S Colombo, G Casella, L Morini, N Caporaso, A Colli, G Spinzi, R Montanari, Peter K Gregersen , EJ Heathcote, GM Hirschfield, KA Siminovitch, CI Amos, ME Gershwin, MF Seldin (2010), "Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis", Nature Genetics, 42(8):658-660.

  15. JP McElroy, BA Cree, SJ Caillier, Peter K Gregersen , J Herbert, OA Khan, Jan Freudenberg, Annette Lee , SL Bridges Jr, SL Hauser, JR Oksenberg, PA Gourraud (2010), "Refining the association of MHC with multiple sclerosis in African Americans", Human Molecular Genetics, 19(15):3080-3088.

  16. TR Mikuls, Gould KA, Bynoté KK, Yu F, Levan TD, Thiele GM, Michaud KD, O'Dell JR, Reimold AM, Hooker R, Caplan L, Johnson DS, Kerr G, Richards JS, Cannon GW, Criswell LA, Noble JA, Bridges SL Jr, Hughes L, Peter K Gregersen (2010), "Anticitrullinated protein antibody (ACPA) in rheumatoid arthritis: influence of an interaction between HLA-DRB1 shared epitope and a deletion polymorphism in glutathione S-transferase in a cross-sectional study", Arthritis Research & Therapy, 12(6):R213.

  17. J Mohammadi, R Ramanujam, S Jarefors, N Rezaei, A Aghamohammadi, Peter K Gregersen , L Hammarström (2010), "IgA deficiency and the MHC: assessment of relative risk and microheterogeneity within the HLA A1 B8, DR3 (8.1) haplotype", Journal of Clinical Immunology, 30(1):138-143.

  18. L Petukhova, M Duvic, M Hordinsky, D Norris, V Price, Y Shimomura, H Kim, P Singh, Annette Lee , WV Chen, KC Meyer, R Paus, CA Jahoda, CI Amos, Peter K Gregersen , AM Christiano (2010), "Genome-wide association study in alopecia areata implicates both innate and adaptive immunity", Nature, 466(7302):113-117.

  19. TR Radstake, O Gorlova, B Rueda, JE Martin, BZ Alizadeh, R Palomino-Morales, MJ Coenen, MC Vonk, AE Voskuyl, AJ Schuerwegh, JC Broen, PL van Riel, R Van't Slot, A Italiaander, RA Ophoff, G Riemekasten, N Hunzelmann, CP Simeon, N Ortego-Centeno, MA González-Gay, MF González-Escribano; Spanish Scleroderma Group, P Airo, J van Laar, A Herrick, J Worthington, R Hesselstrand, V Smith, F de Keyser, F Houssiau, MM Chee, R Madhok, P Shiels, R Westhovens, A Kreuter, H Kiener, E de Baere, T Witte, L Padykov, L Klareskog, L Beretta, R Scorza, BA Lie, AM Hoffmann-Vold, P Carreira, J Varga, M Hinchcliff, Peter K Gregersen , Annette T Lee , J Ying, Y Han, SF Weng, CI Amos, FM Wigley, L Hummers, JL Nelson, SK Agarwal, S Assassi, P Gourh, FK Tan, BP Koeleman, FC Arnett, J Martin, MD Mayes (2010), "Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus", Nature Genetics, 42(5):426-429.

  20. IB Richman, SA Chung, KE Taylor, R Kosoy, C Tian, WA Ortmann, J Nititham, Annette Lee, S Rutman, M Petri, S Manzi, TW Behrens, Peter K Gregersen , MF Seldin, LA Criswell (2010), "European population substructure correlates with systemic lupus erythematosus endophenotypes in North Americans of European descent", Genes and Immunity, 11(6):515-521.

  21. Eli A Stahl, Soumya Raychaudhuri, Elaine F Remmers, Gang Xie, Stephen Eyre, Brian P Thomson, Yonghong Li, Fina A S Kurreeman, Alexandra Zhernakova, Anne Hinks, Candace Guiducci, Robert Chen, Lars Alfredsson, Christopher I Amos, Kristin G Ardlie, BIRAC Consortium, Anne Barton, John Bowes, Elisabeth Brouwer, Noel P Burtt, Joseph J Catanese, Jonathan Coblyn, Marieke J H Coenen, Karen H Costenbader, Lindsey A Criswell, J Bart A Crusius, Jing Cui, Paul I W de Bakker, Philip L De Jager, Bo Ding, Paul Emery, Edward Flynn, Pille Harrison, Lynne J Hocking, Tom W J Huizinga, Daniel L Kastner, Xiayi Ke, Annette T Lee, Xiangdong Liu, Paul Martin, Ann W Morgan, Leonid Padyukov, Marcel D Posthumus, Timothy R D J Radstake, David M Reid, Mark Seielstad, Michael F Seldin, Nancy A Shadick, Sophia Steer, Paul P Tak, Wendy Thomson, Annette H M van der Helm-van Mil, Irene E van der Horst-Bruinsma, C Ellen van der Schoot, Piet L C M van Riel, Michael E Weinblatt, Anthony G Wilson, Gert Jan Wolbink, B Paul Wordsworth, YEAR Consortium, Cisca Wijmenga, Elizabeth W Karlson, Rene E M Toes, Niek de Vries, Ann B Begovich, Jane Worthington, Katherine A Siminovitch, Peter K Gregersen, Lars Klareskog, Robert M Plenge (2010), "Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci", Nature Genetics, 42(6):508-514.
    [ abstract]

  22. I Surolia, SP Pirnie, V Chellappa, KN Taylor,A Cariappa, J Moya, H Liu, DW Bell, DR Driscoll, S Diederichs, K Haider, I Netravali, S Le, R Elia, E Dow, Annette Lee, Jan Freudenberg , PL De Jager, Y Chretien, A Varki, ME Macdonald, T Gillis, TW Behrens, D Bloch, D Collier, J Korzenik, DK Podolsky, D Hafler, M Murali, B Sands, JH Stone, Peter K Gregersen , S Pillai (2010), "Functionally defective germline variants of sialic acid acetylesterase in autoimmunity", Nature, 466(7303):243-247.

  23. JA Van Nies, R Knevel, N Daha, MP Van der Linden, Peter K Gregersen , Marlena Kern , S le Cessie, JJ Houwing-Duistermaat, TW Huizinga, RE Toes, AH Van der Helm-van Mil (2010), "The PTPN22 susceptibility risk variant is not associated with the rate of joint destruction in anti-citrullinated protein antibody-positive rheumatoid arthritis", Annals of the Rheumatic Diseases, 69(9):1730-1731.
2009

  1. I Aksentijevich, Masters SL, Ferguson PJ, Dancey P, Frenkel J, van Royen-Kerkhoff A, Laxer R, Tedgĺrd U, Cowen EW, Pham TH, Booty M, Estes JD, Sandler NG, Plass N, Stone DL, Turner ML, Hill S, Butman JA, Schneider R, Babyn P, El-Shanti HI, Pope E, Barron K, Bing X, Laurence A, Lee CC, Chapelle D, Clarke GI, Ohson K, Nicholson M, Gadina M, Yang B, Korman BD, Peter K Gregersen , van Hagen PM, Hak AE, Huizing M, Rahman P, Douek DC, Remmers EF, Kastner DL, Goldbach-Mansky R (2009), "An autoinflammatory disease with deficiency of the interleukin-1-receptor antagonist", New England Journal of Medicine, 360(23):2426-2437.

  2. JW Bauer, M Petri, Franak M Batliwalla, T Koeuth, J Wilson, C Slattery, A Panoskaltsis-Mortari, Peter K Gregersen , TW Behrens, EC Baechler (2009), "Interferon-regulated chemokines as biomarkers of systemic lupus erythematosus disease activity: a validation study", Arthritis & Rheumatism, 60(10):3098-30107.

  3. JR Bienkowska, Dalgin GS, Franak Batliwalla , Allaire N, Roubenoff R, Peter K Gregersen , Carulli JP. "Convergent random forest predictor: Methodology for predicting drug response from genome-scale data applied to anti-TNF response", Genomics, 94(6):423-432.

  4. S Birnbaum, Ludwig KU, Reutter H, Herms S, Steffens M, Rubini M, Baluardo C, Ferrian M, Almeida de Assis N, Alblas MA, Barth S, Jan Freudenberg , Lauster C, Schmidt G, Scheer M, Braumann B, Bergé SJ, Reich RH, Schiefke F, Hemprich A, Pötzsch S, Steegers-Theunissen RP, Pötzsch B, Moebus S, Horsthemke B, Kramer FJ, Wienker TF, Mossey PA, Propping P, Cichon S, Hoffmann P, Knapp M, Nöthen MM, Mangold E (2009), "Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24", Nature Genetics, 41(4):473-477.

  5. SA Chung, C Tian, KE Taylor, Annette T Lee, WA Ortmann, G Hom, RR Graham, J Nititham, JA Kelly, J Morrisey, H Wu, H Yin, ME Alarcón-Riquelme, BP Tsao, JB Harley, PM Gaffney, KL Moser, S Manzi, M Petri, Peter K Gregersen, CD Langefeld, TW Behrens, MF Seldin, LA Criswell (2009), "European population substructure is associated with mucocutaneous manifestations and autoantibody production in systemic lupus erythematosus", Arthritis & Rheumatism, 60(8):2448-2456.

  6. WK Chung, A Patki, N Matsuoka, BB Boyer, N Liu, SK Musani, AV Goropashnaya, PL Tan, N Katsanis, SB Johnson, Peter K Gregersen, DB Allison, RL Leibel, HK Tiwari (2009), "Analysis of 30 genes (355 SNPS) related to energy homeostasis for association with adiposity in European-American and Yup'ik Eskimo populations", Human Heredity, 67(3):193-205.

  7. MJ Coenen, Peter K Gregersen (2009), "Rheumatoid arthritis: a view of the current genetic landscape", Genes and Immunity, 10(2):101-111.

  8. B Ding, L Padyukov, E Lundström, M Seielstad, RM Plenge, JR Oksenberg, Peter K Gregersen , L Alfredsson, L Klareskog (2009), "Different patterns of associations with anti-citrullinated protein antibody-positive and anti-citrullinated protein antibody-negative rheumatoid arthritis in the extended major histocompatibility complex region", Arthritis & Rheumatism, 60(1):30-38.

  9. M Feser, LA Derber, KD Deane, DC Lezotte, MH Weisman, JH Buckner, T Mikuls, J O'Dell, Peter K Gregersen , VM Holers, JM Norris (2009), "Plasma 25,OH vitamin D concentrations are not associated with rheumatoid arthritis (RA)-related autoantibodies in individuals at elevated risk for RA", Journal of Rheumatology, 36(5):943-946.

  10. Jan Freudenberg , Minyi Wang, Yaning Yang, Wentian Li (2009), "Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome", BMC Bioinformatics, 10(suppl 1):S66.
    [ abstract]

  11. V Gateva, Sandling JK, Hom G, Taylor KE, Chung SA, Sun X, Ortmann W, Kosoy R, Ferreira RC, Nordmark G, Gunnarsson I, Svenungsson E, Padyukov L, Sturfelt G, Jönsen A, Bengtsson AA, Rantapää-Dahlqvist S, Baechler EC, Brown EE, Alarcón GS, Edberg JC, Ramsey-Goldman R, McGwin G Jr, Reveille JD, Vilá LM, Kimberly RP, Manzi S, Petri MA, Annette Lee, Peter K Gregersen , Seldin MF, Rönnblom L, Criswell LA, Syvänen AC, Behrens TW, Graham RR (2009), "A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus", Nature Genetics, 41(11):1228-1233.

  12. TE Goldberg, R Kotov, Annette T Lee, Peter K Gregersen , T Lencz, E Bromet, AK Malhotra (2009), "The serotonin transporter gene and disease modification in psychosis: Evidence for systematic differences in allelic directionality at the 5-HTTLPR locus", Schizophrenia Research, 111(1-3):103-108.

  13. Peter K Gregersen (2009), "Closing the gap between genotype and phenotype" (news and views), Nature Genetics, 41(9):958-959.

  14. Peter K Gregersen , Amos CI, Annette T Lee , Lu Y, Remmers EF, Kastner DL, Seldin MF, Criswell LA, Plenge RM, Holers VM, Mikuls TR, Sokka T, Moreland LW, Bridges SL Jr, Xie G, Begovich AB, Siminovitch KA (2009) "REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis", Nature Genetics, 41(7):820-823.

  15. Peter K Gregersen, Lina M Olsson (2009), "Recent advances in the genetics of autoimmune disease", Annual Review of Immunology, 27:363-391.

  16. S Han, X Kim-Howard, H Deshmukh, Y Kamatani, P Viswanathan, JM Guthridge, K Thomas, KM Kaufman, J Ojwang, A Rojas-Villarraga, V Baca, L Orozco, B Rhodes, CB Choi, Peter K Gregersen , JT Merrill, JA James, PM Gaffney, KL Moser, CO Jacob, RP Kimberly, JB Harley, SC Bae, JM Anaya, ME Alarcón-Riquelme, K Matsuda, TJ Vyse, SK Nath (2009), "Evaluation of imputation-based association in and around the Integrin-alpha-M (ITGAM) gene and replication of robust association between a non-synonymous functional variant within ITGAM and systemic lupus erythematosus (SLE)", Human Molecular Genetics, 18(6):1171-1180.

  17. AM Hillmer, Jan Freudenberg , Myles S, Herms S, Tang K, Hughes DA, Brockschmidt FF, Ruan Y, Stoneking M, Nöthen MM (2009), "Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness", Human Genetics, 126(2):255-264.
    [ abstract]

  18. W Hueber, Tomooka BH, Franak Batliwalla, Wentian Li, Monach PA, Tibshirani RJ, Van Vollenhoven RF, Lampa J, Saito K, Tanaka Y, Genovese MC, Klareskog L, Peter K Gregersen , Robinson WH (2009), "Blood autoantibody and cytokine profiles predict response to anti-tumor necrosis factor therapy in rheumatoid arthritis", Arthritis Research & Therapy, 11(3):R76.

  19. M Hultqvist, Lina M Olsson , KA Gelderman, R Holmdahl (2009), "The protective role of ROS in autoimmune disease", Trends in Immunology, 30(5):201-208.

  20. International MHC and Autoimmunity Genetics Network, JD Rioux, P Goyette, TJ Vyse, L Hammarström, MM Fernando, T Green, PL De Jager, S Foisy, J Wang, PI de Bakker, S Leslie, G McVean, L Padyukov, L Alfredsson, V Annese, DA Hafler, Q Pan-Hammarström, R Matell, SJ Sawcer, AD Compston, BA Cree, DB Mirel, MJ Daly, TW Behrens, L Klareskog, Peter K Gregersen , JR Oksenberg, SL Hauser (2009), "Mapping of multiple susceptibility variants within the MHC region for 7 immune-mediated diseases", Proceedings of National Academy of Sciences, 106(44):18680-18685.

  21. M Johannesson, R Lopez-Aumatell, P Stridh, M Diez, J Tuncel, G Blázquez, E Martinez-Membrives, T Cańete, E Vicens-Costa, D Graham, RR Copley, P Hernandez-Pliego, AD Beyeen, J Ockinger, C Fernández-Santamaría, Percio S Gulko, Max Brenner , A Tobeńa, M Guitart-Masip, L Giménez-Llort, A Dominiczak, R Holmdahl, D Gauguier, T Olsson, R Mott, W Valdar, EE Redei, A Fernández-Teruel, J Flint (2009), "A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: the NIH heterogeneous stock", Genome Research, 19(1):150-158.

  22. JR Kolfenbach, KD Deane, LA Derber, C O'Donnell, MH Weisman, JH Buckner, VH Gersuk, S Wei, TR Mikuls, J O'Dell, Peter K Gregersen , RM Keating, JM Norris, VM Holers (2009), "A prospective approach to investigating the natural history of preclinical rheumatoid arthritis (RA) using first-degree relatives of probands with RA", Arthritis & Rheumatism, 61(12):1735-1742.

  23. BD Korman, MF Seldin, KE Taylor, JM Le, Annette T Lee , RM Plenge, CI Amos, LA Criswell, Peter K Gregersen , DL Kastner, EF Remmers (2009), "The chromosome 7q region association with rheumatoid arthritis in females in a British population is not replicated in a North American case-control series", Arthritis & Rheumatism, 60(1):47-52.

  24. R Kosoy, R Nassir, C Tian, PA White, LM Butler, G Silva, R Kittles, ME Alarcon-Riquelme, Peter K Gregersen , JW Belmont, FM De La Vega, MF Seldin (2009), "Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America", Human Mutation, 30(1):69-78.
    [ abstract]

  25. Hye-Soon Lee, BD Korman, JM Le, DL Kastner, EF Remmers, Peter K Gregersen (2009), "Genetic risk factors for rheumatoid arthritis differ in caucasian and Korean populations", Arthritis & Rheumatism, 60(2):364-371.

  26. YC Lee, Raychaudhuri S, Cui J, de Vivo I, Ding B, Alfredsson L, Padyukov L, Costenbader KH, Seielstad M, Graham RR, Klareskog L, Peter K Gregersen , Plenge RM, Karlson EW. (2009), "The PRL -1149 G/T polymorphism and rheumatoid arthritis susceptibility", Arthritis & Rheumatism, 60(5):1250-1254.

  27. Wentian Li, Jan Freudenberg (2009) , "Two-parameter characterization of chromosome-scale recombination rate", Genome Research, 19:2300-2307.
    [ abstract]

  28. Wentian Li, Annette Lee, Peter K Gregersen (2009), "Copy-number-variation and copy-number-alteration region detection by cumulative plots", BMC Bioinformatics, 10(suppl 1):S67.
    [ abstract]

  29. Wentian Li, Y Yang (2009), "Fractal characterizations of MAX statistical distribution in genetic association studies", Advances in Complex Systems, 12(4-5):513-531.
    [ abstract]

  30. K Liu, QZ Li, AM Delgado-Vega, AK Abelson, E Sánchez, JA Kelly, L Li, Y Liu, J Zhou, M Yan, Q Ye, S Liu, C Xie, XJ Zhou, SA Chung, B Pons-Estel, T Witte, E de Ramón, SC Bae, N Barizzone, GD Sebastiani, JT Merrill, Peter K Gregersen , GG Gilkeson, RP Kimberly, TJ Vyse, I Kim, S D'Alfonso, J Martin, JB Harley, LA Criswell, EK Wakeland, ME Alarcón-Riquelme, C Mohan (2009), "Kallikrein genes are associated with lupus and glomerular basement membrane-specific antibody-induced nephritis in mice and humans", Journal of Clinical Investigation, 119(4):911-923.

  31. R Nassir, R Kosoy, C Tian, PA White, LM Butler, G Silva, R Kittles, ME Alarcon-Riquelme, Peter K Gregersen , JW Belmont, FM De La Vega, MF Seldin (2009), "An ancestry informative marker set for determining continental origin: validation and extension using human genome diversity panels" BMC Genetics, 10:39.
    [ abstract]

  32. M Petri, Singh S, Tesfasyone H, Dedrick R, Fry K, Lal P, Williams G, Bauer J, Peter Gregersen , Behrens T, Baechler E (2009), "Longitudinal expression of type I interferon responsive genes in systemic lupus erythematosus", Lupus, 18(11):980-989.

  33. S Raychaudhuri, BP Thomson, EF Remmers, S Eyre, A Hinks, C Guiducci, JJ Catanese, G Xie, EA Stahl, R Chen, L Alfredsson, CI Amos, KG Ardlie; BIRAC Consortium, A Barton, J Bowes, NP Burtt, M Chang, J Coblyn, KH Costenbader, LA Criswell, JB Crusius, J Cui, PL De Jager, B Ding, P Emery, E Flynn, P Harrison, LJ Hocking, TW Huizinga, DL Kastner, X Ke, FA Kurreeman, Annette Lee , X Liu, Y Li, P Martin, AW Morgan, L Padyukov, DM Reid, M Seielstad, MF Seldin, NA Shadick, S Steer, PP Tak, W Thomson, AH van der Helm-van Mil, IE van der Horst-Bruinsma, ME Weinblatt, AG Wilson, GJ Wolbink, P Wordsworth P; YEAR Consortium, D Altshuler, EW Karlson, RE Toes, N de Vries, AB Begovich, KA Siminovitch, J Worthington, L Klareskog, Peter K Gregersen , MJ Daly, RM Plenge (2009), "Genetic variants at CD28, PRDM1 and CD2/CD58 are associated with rheumatoid arthritis risk", Nature Genetics, 41(12):1313-1318.

  34. Jose Luis Santiago, Wentian Li, Annette Lee, Alfonso Martinez, Alamelu Chandrasekaran , Miguel Fernandez-Arquero, Houman Khalili, Emilio G. de la Concha, Elena Urcelay, Peter K. Gregersen (2009), "Localization of Type 1 Diabetes susceptibility in the Ancestral Haplotype 18.2 by high density SNP mapping", Genomics, 94(4):228-232.
    [ abstract]

  35. Till Seiler, Manuela Woelfle, Sophia Yancopoulos, Rosa Catera, Wentian Li, Katerina Hatzi, Carol Moreno, Marcela Torres, Santanu Paul, Hartmut Dohner, Stephan Stilgenbauer, Matthew S Kaufman, Jonathan E Kolitz, Steven L Allen, Kanti R Rai, Charles C Chu, Nicholas Chiorazzi (2009), "Characterization of structurally-defined epitopes recognized by monoclonal antibodies produced by chronic lymphocytic leukemia B cells", Blood, 114(17):3615-3624.
    [ abstract]

  36. MS Silverberg, JH Cho, JD Rioux, DP McGovern, J Wu, V Annese, JP Achkar, P Goyette, R Scott, W Xu, MM Barmada, L Klei, MJ Daly, C Abraham, TM Bayless, F Bossa, AM Griffiths, AF Ippoliti, RG Lahaie, A Latiano, P Paré, DD Proctor, MD Regueiro, AH Steinhart, SR Targan, LP Schumm, EO Kistner, Annette T Lee, Peter K Gregersen , JI Rotter, SR Brant, KD Taylor, K Roeder, RH Duerr (2009), "Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study", Nature Genetics, 41(2):216-220. Corrigendum: 41(6):762.

  37. C Tian, Kosoy R, Nassir R, Annette Lee , Villoslada P, Klareskog L, Hammarström L, Garchon HJ, Pulver AE, Ransom M, Peter K Gregersen , Seldin MF (2009), "European population genetic substructure: further definition of ancestry informative markers for distinguishing among diverse European ethnic groups", Molecular Medicine, 15(11-12):371-383.

  38. U Todt, Netzer C, Toliat M, Heinze A, Goebel I, Nürnberg P, Göbel H, Jan Freudenberg , Kubisch C (2009), "New genetic evidence for involvement of the dopamine system in migraine with aura", Human Genetics, 125(3):265-279.

  39. MP Van der Linden, AL Feitsma, S le Cessie, Marlena Kern, Lina M Olsson , S Raychaudhuri, AB Begovich, M Chang, JJ Catanese, FA Kurreeman, J van Nies, DM van der Heijde, Peter K Gregersen , TW Huizinga, RE Toes, AH van der Helm-Van Mil (2009), "Association of a single-nucleotide polymorphism in CD40 with the rate of joint destruction in rheumatoid arthritis", Arthritis & Rheumatism, 60(8):2242-2247.
    [ abstract]

  40. CC Wu, S Shete, WV Chen, B Peng, Annette T Lee , J Ma, Peter K Gregersen , CI Amos (2009), "Detection of disease-associated deletions in case-control studies using SNP genotypes with application to rheumatoid arthritis", Human Genetics, 126(2):303-315.
2008

  1. M Chang, CM Rowland, VE Garcia, SJ Schrodi, JJ Catanese, AH van der Helm-van Mil, KG Ardlie, CI Amos, LA Criswell, DL Kastner, Peter K Gregersen , FA Kurreeman, RE Toes, TW Huizinga, MF Seldin, AB Begovich (2008), "A large-scale rheumatoid arthritis genetic study identifies association at chromosome 9q33.2", PLoS Genetics, 4(6):e1000107.
    [ html]

  2. M Chang, RK Saiki, JJ Cantanese, D Lew, AH van der Helm-van Mil, RE Toes, TW Huizinga, KG Ardlie, LA Criswell, MF Seldin, CI Amos, DL Kastner, Peter K Gregersen , SJ Schrodi, AB Begovich (2008), "The inflammatory disease-associated variants in IL12B and IL23R are not associated with rheumatoid arthritis", Arthritis & Rheumatism, 58(6):1877-1881.
    [ abstract] [PDF]

  3. Geoffrey Hom, Robert R. Graham, Barmak Modrek, Kimberly E. Taylor, Ward Ortmann, Sophie Garnier, Annette T Lee, Sharon A. Chung, Ricardo C. Ferreira, P.V. Krishna Pant, Dennis G. Ballinger, Roman Kosoy, F. Yesim Demirci, M. Ilyas Kamboh, Amy H. Kao, Chao Tian, Iva Gunnarsson, Anders A. Bengtsson, Solbritt Rantapää-Dahlqvist, Michelle Petri, Susan Manzi, Michael F. Seldin, Lars Rönnblom, Ann-Christine Syvänen, Lindsey A. Criswell, Peter K. Gregersen, Timothy W. Behrens, "Association of Systemic Lupus Erythematosus with C8orf13-BLK and ITGAM-ITGAX", New England Journal of Medicine, 358(9):900-909.
    [abstract]

  4. AK Johnsen, Plenge RM, Butty V, Campbell C, Dieguez-Gonzalez R, Gomez-Reino JJ, Shadick N, Weinblatt M, Gonzalez A, Peter K Gregersen , Benoist C, Mathis D (2008), "A broad analysis of IL1 polymorphism and rheumatoid arthritis", Arthritis & Rheumatism, 58(7):1947-1957.
    [ abstract] [PDF]

  5. BD Korman, DL Kastner, Peter K Gregersen , EF Remmers (2008), "STAT4: genetics, mechanisms, and implications for autoimmunity", Current Allergy and Asthma Reports, 8(5):398-403.
    [ abstract]

  6. Teresina Laragione, Max Brenner, Wentian Li, Percio S. Gulko (2008), "Cia5d regulates a new fibroblast-like synoviocyte invasion-associated gene expression signature", Arthritis Research & Therapy, 10(4):R92.
    [ abstract]

  7. Teresa Laragione, Max Brenner, Adriana Mello, M Symons, Percio S Gulko (2008), "The arthritis severity locus Cia5d is a novel genetic regulator of the invasive properties of synovial fibroblasts", Arthritis & Rheumatism, 58(8):2296-2306.
    [ abstract] [PDF]

  8. Hye-Soon Lee, Annette T. Lee, Lindsey A. Criswell, Michael F. Seldin, Christopher I Amos, John P Carulli, Cristina Navarrete, Elaine F Remmers, Daniel L. Kastner, Robert M Plenge, Wentian Li, Peter K. Gregersen (2008), "Several regions in the major histocompatibility complex confer risk for anti-CCP-antibody positive rheumatoid arthritis, independent of the DRB1 locus", Molecular Medicine, 14(5-6):293-300.
    [abstract] [html] [PDF] [PDF (supplementary material)]

  9. Wentian Li (2008), "Three lectures on case-control genetic association analysis", Briefings in Bioinformatics, 9:1-13.
    [abstract]

  10. Wentian Li, Young Ju Suh, Yaning Yang (2008), "Exploring case-control genetic association tests using phase diagrams", Computational Biology and Chemistry, 32(6):391-399.
    [ abstract]

  11. Chunyu Liu, Franak Batliwalla, Wentian Li, Annette Lee, Ronenn Roubenoff, Evan Beckman, Houman Khalili, Aarti Damle, Marlena Kern, Richard Furie, Robert M Plenge, Marieke Coenen, Timothy W Behrens, John P Carulli, Peter K Gregersen (2008), "Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis", Molecular Medicine, 14(9-10):575-581.
    [abstract] [PDF] [PDF (supplementary material)]

  12. SL Musone, KE Taylor, TT Lu, J Nititham, RC Ferreira, W Ortmann, N Shifrin, MA Petri, M Ilyas Kamboh, S Manzi, MF Seldin, Peter K Gregersen , TW Behrens, A Ma, PY Kwok, LA Criswell (2008), "Multiple polymorphisms in the TNFAIP3 region are independently associated with systemic lupus erythematosus", Nature Genetics, 40(9):1062-1064.
    [ abstract] [PDF]

  13. Soumya Raychaudhuri, Elaine F Remmers, Annette T Lee, Rachel Hackett, Candace Guiducci, Noël P Burtt, Lauren Gianniny, Benjamin D Korman, Leonid Padyukov, Fina A S Kurreeman, Monica Chang, Joseph J Catanese, Bo Ding, Sandra Wong, Annette H M van der Helm-van Mil, Benjamin M Neale, Jonathan Coblyn, Jing Cui, Paul P Tak, Gert Jan Wolbink, J Bart A Crusius, Irene E van der Horst-Bruinsma, Lindsey A Criswell, Christopher I Amos, Michael F Seldin, Daniel L Kastner, Kristin G Ardlie, Lars Alfredsson, Karen H Costenbader, David Altshuler, Tom W J Huizinga, Nancy A Shadick, Michael E Weinblatt, Niek de Vries, Jane Worthington, Mark Seielstad, Rene E M Toes, Elizabeth W Karlson, Ann B Begovich, Lars Klareskog, Peter K Gregersen, Mark J Daly, Robert M Plenge (2008), "Common variants at CD40 and other loci confer risk of rheumatoid arthritis", Nature Genetics, 40(10):1216-1223.
    [ abstract]

  14. R Roubenoff, E Beckman, M Weinblatt, N Shadick, Peter K Gregersen (2008), "Biological significance of anti-cyclic citrullinated peptide antibody in rheumatoid arthritis", Annals of Internal Medicine, 148(5):403.

  15. The International Consortium for Systemic Lupus Erythematosus Genetics (SLEGEN), SK Nath, JM Guthridge, BL Cobb, DB Mirel, MC Marion, AH Williams, JD Divers, W Wang, SG Frank, B Namjou, SB Gabriel, Annette T Lee, Peter G Gregersen, TW Behrens, KW Taylor, M Fernando, R Zidovetzki, PM Gaffney, JC Edberg, JD Rioux, JO Ojwang, JA James, JT Merrill, GS Gilkeson, MF Seldin, H Yin, EC Baechler, QZ Li, EK Wakeland, GR Bruner, KM Kaufman, JA Kelly, JB Harley, ME Alarcón-Riquelme, LA Criswell, CO Jacob, RP Kimberly, KL Moser, BP Tsao, TJ Vyse, CD Langefeld (2008), "Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci", Nature Genetics, 40(2):204-210.
    [ abstract] [PDF]

  16. KE Taylor, EF Remmers, Annette Lee , WA Ortmann, RM Plenge, C Tian, SA Chung, J Nititham, G Hom, AH Kao, FY Demirci, MI Kamboh, M Petri, S Manzi, DL Kastner, MF Seldin, Peter K Gregersen , TW Behrens, LA Criswell (2008), "Specificity of the STAT4 genetic association for severe disease manifestations of systemic lupus erythematosus", PLoS Genetics, 4(5):e1000084.
    [ html]

  17. Chao Tian, Peter K Gregersen, Michael F Seldin (2008), "Accounting for ancestry: population substructure and genome-wide association studies", Human Molecular Genetics, 17:R143-R150.
    [abstract]

  18. C Tian, R Kosoy, A Lee, M Ransom, JW Belmont, PK Gregersen, MF Seldin (2008), "Analysis of East Asia genetic substructure using genome-wide SNP arrays", PLoS ONE, 3(12):e3862.

  19. C Tian, RM Plenge, M Ransom, Annette Lee , P Villoslada, C Selmi, L Klareskog, AE Pulver, L Qi, Peter K Gregersen , MF Seldin (2008), "Analysis and application of European genetic substructure using 300 K SNP information", PLoS Genetics, 4(1):e4.
    [ html]

  20. X Zhao, NL Okeke, O Sharpe, Franak M Batliwalla, Annette T Lee , PP Ho, BH Tomooka, Peter K Gregersen, WH Robinson (2008), "Circulating immune complexes contain citrullinated fibrinogen in rheumatoid arthritis", Arthritis Research & Therapy, 10(4):R94.
    [ abstract]

  21. G Zheng, M Meyer, Wentian Li, Y Yang (2008), "Comparison of two-stage analyses for case-control genetic association studies", Statistics in Medicine, 27(24):5054-5075.
    [ abstract]
2007

  1. Christopher I Amos, Wei Vivien Chen, Elaine Remmers, Katherine A Siminovitch, Michael F Seldin, Lindsey A Criswell, Annette T Lee, Sally John, Neil D Shephard, Jane Worthington, Francois Cornelis, Robert M Plenge, Ann B Begovich, Thomas D Dyer, Daniel L Kastner, Peter K Gregersen (2007), "Data for Genetic Analysis Workshop (GAW) 15 Problem 2, genetic causes of rheumatoid arthritis and associated traits", BMC Proceedings, 1(suppl 1):S3.
    [abstract]

  2. EC Baechler, Bauer JW, Slattery CA, Ortmann WA, Espe KJ, Novitzke J, Ytterberg SR, Peter K Gregersen , Behrens TW, Reed AM. (2007), "An interferon signature in the peripheral blood of dermatomyositis patients is associated with disease activity", Molecular Medicine, 13(1-2):59-68.
    [abstract]

  3. Max Brenner, Teresa Laragione, Adriana Mello, Percio S Gulko (2007), "Cia25 on rat chromosome 12 regulates severity of autoimmune arthritis induced with pristane and collagen", Annals of the Rheumatic Diseases, 66(7):952-957.

  4. Max Brenner, Teresa Laragione, Nuriza C Yarlett, Percio S Gulko (2007), "Genetic regulation of T regulatory, CD4, and CD8 cell numbers by the arthritis severity loci Cia5a, Cia5d and the MHC in the rat", Molecular Medicine, 13(5-6):277-287.
    [abstract] [PDF]

  5. A Chan, M Akhtar, Max Brenner, Y Zheng, Percio S Gulko , M Symons (2007), The GTPase Rac regulates the proliferation and invasion of fibroblast-like synoviocytes from rheumatoid arthritis patients", Molecular Medicine, 13(5-6):297-304.
    [abstract] [PDF]

  6. WV Chen, CI Amos, CJ Etzel, S Shete, Peter K Gregersen (2007), "Comparison of genome-wide single-nucleotide polymorphism linkage analyses in Caucasian and Hispanic NARAC families", BMC Proceedings, 1(suppl 1):S97.
    [abstract]

  7. LA Criswell, WV Chen, D Jawaheer, RF Lum, MH Wener, X Gu, Peter K Gregersen , CI Amos (2007), "Dissecting the heterogeneity of rheumatoid arthritis through linkage analysis of quantitative traits", Arthritis & Rheumatism, 56(1):58-68.
    [ abstract] [PDF]

  8. L Dagna, G Frontino, L Praderio, EF Remmers, RM Plenge, Peter G Gregersen (2007), "Rheumatoid arthritis, systemic lupus erythematosus, and STAT4" (correspondence), New England Journal of Medicine, 357(24):2517-2518.
    [extract]

  9. RS Goldstein, A Bruchfeld, L Yang, AR Qureshi, M Gallowitsch-Puerta, NB Patel, BJ Huston, S Chavan, M Rosas-Ballina, Peter K Gregersen, CJ Czura, RP Sloan, AE Sama, KJ Tracey (2007), "Cholinergic anti-inflammatory pathway activity and high mobility group box-1 (HMGB1) serum levels in patients with rheumatoid arthritis", Molecular Medicine, 13(3-4):210-215.
    [abstract] [PDF]

  10. RR Graham, C Kyogoku, S Sigurdsson, IA Vlasova, LR Davies, EC Baechler, RM Plenge, T Koeuth, WA Ortmann, G Hom, JW Bauer, C Gillett, N Burtt, DS Cunninghame Graham, R Onofrio, M Petri, I Gunnarsson, E Svenungsson, L Ronnblom, G Nordmark, Peter K Gregersen , K Moser, PM Gaffney, LA Criswell, TJ Vyse, AC Syvanen, PR Bohjanen, MJ Daly, TW Behrens, D Altshuler (2007), "Three functional variants of IFN regulatory factor 5 (IRF5) define risk and protective haplotypes for human lupus", Proceedings of National Academy of Sciences, 104(16):6758-6763.
    [abstract]

  11. RR Graham, W Ortmann, P Rodine, K Espe, C Langefeld, E Lange, A Williams , S Beck, C Kyogoku, K Moser, P Gaffney , Peter G Gregersen , LA Criswell, JB Harley, TW Behrens (2007), "Specific combinations of HLA-DR2 and DR3 class II haplotypes contribute graded risk for disease susceptibility and autoantibodies in human SLE", European Journal of Human Genetics, 15(8):823-830.
    [abstract]

  12. Petet K Gregersen (2007) "Modern genetics, ancient defenses, and potential therapies" (editorial), New England Journal of Medicine, 356(12):1263-1266.
    [extract]

  13. Petet K Gregersen, Elena Kowalsky, Wentian Li (2007) "Reply to Henthorn and Deutsch -- Ethnicity versus early environment: Comment on 'Early childhood music education and predisposition to absolute pitch: teasing apart genes and environment" (letters to the editor), American Journal of Medical Genetics, 143A:104-105.
    [PDF]

  14. Percio S Gulko (2007), "Contribution of genetic studies in rodent models of autoimmune arthritis to understanding and treatment of rheumatoid arthritis", Genes and Immunity, 8(7):523-531.
    [abstract]

  15. H Kallberg, L Padyukov, RM Plenge, J Ronnelid, Peter K Gregersen, AH van der Helm-van Mil, RE Toes, TW Huizinga, L Klareskog, L Alfredsson (Epidemiological Investigation of Rheumatoid Arthritis (EIRA) Study Group) (2007), "Gene-gene and gene-environment interactions involving HLA-DRB1, PTPN22, and smoking in two subsets of rheumatoid arthritis", American Journal of Human Genetics, 80(5):867-875.
    [abstract]

  16. Teresa Laragione, Max Brenner, Nuriza C Yarlett, Adriana Mello, EJ Miller, CN Metz, B Sherry, Percio S Gulko (2007), "The arthritis severity quantitative trait locus Cia7 regulates neutrophil migration into inflammatory sites", Genes and Immunity, 8:147-153.
    [abstract] [PDF]

  17. Teresa Laragione, Nuriza C Yarlett, Max Brenner, Adriana Mello, B Sherry, EJ Miller, CN Metz, Percio S Gulko (2007), "The arthritis severity quantitative trait loci Cia4 and Cia6 regulate neutrophil migration into inflammatory sites and levels of TNF-alpha and nitric oxide", Journal of Immunology, 178(4):2344-2351.

  18. Hye-Soon Lee, Patricia Irigoyen, Marlena Kern, Annette Lee, Franak Batliwalla, Houman Khalili, F Wolfe, RF Lum, E Massarotti, M Weisman, C Bombardier, EW Karlson, LA Criswell, Robert Vlietinck, Peter K Gregersen (2007), "Interaction between smoking, the shared epitope, and anti-cyclic citrullinated peptide: A mixed picture in three large North American rheumatoid arthritis cohorts", Arthritis & Rheumatism, 56(6):1745-1753.
    [ abstract] [PDF]

  19. Hye-Soon Lee , Elaine F Remmers, Julia M Le, Daniel L Kastner, Sang Cheol Bae, Peter K Gregersen (2007), "Association of STAT4 with Rheumatoid Arthritis in the Korean population", Molecular Medicine, 13(9-10):455-460.
    [abstract] [PDF]

  20. KL Meyer-Siegler, PL Vera, KA Iczkowski, C Bifulco, Annette Lee, Peter K Gregersen , L Leng, R Bucala (2007), "Macrophage migration inhibitory factor (MIF) gene polymorphisms are associated with increased prostate cancer incidence", Genes and Immunity, 8(8):646-652.
    [abstract]

  21. Robert M Plenge, Chris Cotsapas, Leela Davies, Alkes L Price, Paul I W de Bakker, Julian Maller, Itsik Pe'er, Noel P Burtt, Brendan Blumenstiel, Matt DeFelice, Melissa Parkin, Rachel Barry, Wendy Winslow, Claire Healy, Robert R Graham, Benjamin M Neale, Elena Izmailova, Ronenn Roubenoff, Alexander N Parker, Roberta Glass, Elizabeth W Karlson, Nancy Maher, David A Hafler, David M Lee, Michael F Seldin, Elaine F Remmers0, Annette T Lee, Leonid Padyukov, Lars Alfredsson, Jonathan Coblyn, Michael E Weinblatt, Stacey B Gabriel, Shaun Purcell, Lars Klareskog, Peter K Gregersen, Nancy A Shadick, Mark J Daly, David Altshuler (2007), "Two independent alleles at 6q23 associated with risk of rheumatoid arthritis", Nature Genetics, 39(12):1477-1482.
    [ abstract] [PDF]

  22. Robert M. Plenge, Mark Seielstad, Leonid Padyukov, Annette T. Lee, Elaine F. Remmers, Bo Ding, Anthony Liew, Houman Khalili, Alamelu Chandrasekaran, Leela RL Davies, Wentian Li, Adrian KS Tan, Carine Bonnard, Rick TH Ong, Anbupalam Thalamuthu, Sven Pettersson, Chunyu Liu, Chao Tian, Wei V. Chen, John P. Carulli, Evan M. Beckman, David Altshuler, Lars Alfredsson, Lindsey A. Criswell, Christopher I. Amos, Michael F. Seldin, Daniel L. Kastner, Lars Klareskog, Peter K. Gregersen (2007), "TRAF1-C5 as a risk locus for rheumatoid arthritis -- a genomewide study", New England Journal of Medicine, 357(12):1199-1209.
    [abstract] [PDF]

  23. Elaine F. Remmers, Robert M. Plenge, Annette T. Lee, Robert R. Graham, Geoffrey Hom, Timothy W. Behrens, Paul IW de Bakker, Julie M. Le, Hye-Soon Lee, Franak Batliwalla, Wentian Li, Seth L. Masters, Matthew G. Booty, John P. Carulli, Leonid Padyukov, Lars Alfredsson, Lars Klareskog, Wei V. Chen, Christopher I. Amos, Lindsey A. Criswell, Michael F. Seldin, Daniel L. Kastner, Peter K. Gregersen (2007), "STAT4 and risk of rheumatoid arthritis and systemic lupus erythematosus", New England Journal of Medicine, 357(10):977-986.
    [abstract] [PDF]

  24. J Sebat, B Lakshmi, D Malhotra, J Troge, C Lese-Martin, T Walsh, B Yamrom, B Yamrom, S Yoon, A Krasnitz, J Kendall, A Leotta, D Pai, R Zhang, YH Lee, J Hicks, SJ Spence, Annette Lee , K Puura, T Lehtimaki, D Ledbetter, Peter K Gregersen , J Bregman, JS Sutcliffe, V Jobanputra, W Chung, D Warburton, MC King, D Skuse, DH Geschwind, TC Gilliam, K Ye, M Wigler (2007), "Strong association of de novo copy number mutations with Autism", Science, 316(5823):445-449.
    [ abstract] [PDF]

  25. H Sekine, RC Ferreira, Q Pan-Hammarstrom, RR Graham, B Ziemba, SS de Vries, J Liu, K Hippen, T Koeuth, W Ortmann, A Iwahori, MK Elliott, S Offer, C Skon, L Du, Novitzke J, Annette Lee, Zhao N, Tompkins JD, Altshuler D, Peter K Gregersen , C Cunningham-Rundles, RS Harris, C Her, DL Nelson, L Hammarstrom, GS Gilkeson, TW Behrens (2007), "Role for Msh5 in the regulation of Ig class switch recombination", Proceedings of National Academy of Sciences, 104(17):7193-7198.
    [abstract]

  26. YJ Suh, Hye-Soon Lee, Franak Batliwalla, Wentian Li (2007), "A comparison of founder-only and all-pedigree-members genotype-expression association by regression analysis", BMC Proceedings, 1(suppl 1):S8.
    [abstract] [PDF]

  27. YJ Suh, Wentian Li (2007), "Genotype-based case-control analysis, violation of Hardy-Weinberg equilibrium, and phase diagram", Proceedings of the 5th Asia-Pacific Bioinformatics Conference, pp.185-194 (Imperial College Press).

  28. Chao Tian, David A. Hinds, Russell Shigeta, Sharon G Adler, Annette Lee, Madeleine V Pahl, Gabriel Silva, John W Belmont, Robert L Hanson, William C Knowler, Peter K Gregersen, Dennis G Ballinger, Michael F Seldin (2007), "A genomewide single-nucleotide-polymorphism panel for Mexican American admixture mapping", American Journal of Human Genetics, 80(6):1014-1023.
2006

  1. CI Amos, Chen WV, Annette Lee, Wentian Li, Marlena Kern, Robert Lundsten, Franak Batliwalla , Wener M, Remmers E, Kastner DA, Criswell LA, Seldin MF, Peter K Gregersen (2006), "High-density SNP analysis of 642 Caucasian families with rheumatoid arthritis identifies two new linkage regions on 11p12 and 2q33", Genes and Immunity, 7(4):277-286.
    [abstract] [PDF]

  2. EC Baechler, Franak M Batliwalla, AM Reed, EJ Peterson, PM Gaffney, KL Moser, Peter K Gregersen, TW Behrens (2006), "Gene expression profiling in human autoimmunity", Immunological Review, 210:120-137.

  3. JW Bauer, EC Baechler, M Petri, Franak M Batliwalla, D Crawford, WA Ortmann, KJ Espe, Wentian Li , DD Patel, Peter K Gregersen , TW Behrens (2006), "Elevated Serum Levels of Interferon-Regulated Chemokines Are Biomarkers for Active Human Systemic Lupus Erythematosus", PLoS Medicine, 3(12):e491.

  4. Max Brenner , C Braun, M Oster, Percio S Gulko (2006), "Thermal signature analysis as a novel method for evaluating inflammatory arthritis activity", Annals of the Rheumatic Diseases, 65(3):306-311.
    [abstract]

  5. Max Brenner, Teresina Laragione, Nuriza C Yarlett, Wentian Li, Adriana Mello, Percio S Gulko (2006), "Cia27 is a novel non-MHC arthritis severity locus on rat chromosome 10 syntenic to the rheumatoid arthritis 17q22-q25 locus", Genes and Immunity, 7(5):335-341.
    [abstract] [PDF]

  6. C Derom, D Jawaheer, WV Chen, KL McBride, Xiangli Xiao, C Amos, Peter K Gregersen (2006), "Genome-wide linkage scan for spontaneous DZ twinning", European Journal of Human Genetics, 14(1):117-122.
    [abstract]

  7. Richard H Duerr, Kent D Taylor, Steven R Brant, John D Rioux, Mark S Silverberg, Mark J Daly, A Hillary Steinhart, Clara Abraham, Miguel Regueiro, Anne Griffiths, Themos Dassopoulos, Alain Bitton, Huiying Yang, Stephan Targan, Lisa W Datta, Emily O Kistner, L Philip Schumm, Annette Lee, Peter K Gregersen, M Michael Barmada, Jerome I Rotter, Dan L Nicolae, and Judy H Cho (2006), "A genome-wide association study identifies IL23R as an inflammatory bowel disease gene", Science, 314(5804):1461-1463.
    [ abstract] [PDF]

  8. CJ Etzel, WV Chen, N Shepard, D Jawaheer, F Cornelis, MF Seldin, Peter K Gregersen, CI Amos, for the North American Rheumatoid Arthritis Consortium (2006), "Genome-wide meta-analysis for rheumatoid arthritis", Human Genetics, 119(6):634-641.
    [abstract]

  9. W Fury, Franak Batliwalla, Peter K Gregersen, Wentian Li (2006), "Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion", Conference proceedings of Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 5531-5541 (IEEE)
    [abstract]

  10. Petet K Gregersen, TW Behrens (2006) "Genetics of autoimmune diseases - disorders of immune homeostasis" Nature Review Genetics, 7(12):917-928.

  11. Petet K Gregersen, Hye-Soon Lee, Franak Batliwalla, AB Begovich (2006), "PTPN22: Setting thresholds for autoimmunity", Seminars in Immunology, 18(4):214-223.

  12. RR Graham, SV Kozyrev, EC Baechler, MV Reddy, RM Plenge, JW Bauer, WA Ortmann, T Koeuth, MF Escribano, the Argentine and Spanish Collaborative Groups, B Pons-Estel, M Petri, M Daly, Petet K Gregersen, J Martin, D Altshuler, TW Behrens, ME Alarcon-Riquelme (2006), "A common haplotype of interferon regulatory factor 5 (IRF5) regulates splicing and expression and is associated with increased risk of systemic lupus erythematosus", Nature Genetics, 38(5):550-555.
    [ abstract] [PDF]

  13. Horvath A, Giatzakis C, Robinson-White A, Boikos S, Levine E, Griffin K, Stein E, Kamvissi V, Soni P, Bossis I, de Herder W, Carney JA, Bertherat J, Peter K Gregersen , Remmers EF, Stratakis CA (2006), "Adrenal hyperplasia and adenomas are associated with inhibition of phosphodiesterase 11A in carriers of PDE11A sequence variants that are frequent in the population", Cancer Research, 66(24):11571-11575.

  14. X Hu, M Chang, RK Saiki, MA Cargill, AB Begovich, KG Ardlie, LA Criswell, MF Seldin, CI Amos, Peter K Gregersen , DL Kastner, EF Remmers (2006), "The functional -169T-->C single-nucleotide polymorphism in FCRL3 is not associated with rheumatoid arthritis in white North Americans", Arthritis & Rheumatism, 54(3):1022-1025.
    [abstract] [PDF]

  15. D Jawaheer, RF Lum, Peter K Gregersen, LA Criswell (2006), "Influence of male sex on disease phenotype in familial rheumatoid arthritis", Arthritis & Rheumatism, 54(10):3087-3094,
    [abstract] [PDF]

  16. Hye-Soon Lee, Wentian Li, Annette Lee, Peter Rodine, Robert R Graham, Ward A Ortmann, Franak Batliwalla , Kyung Wha Lee, Sang Cheol Bae, Timothy W Behrens, Peter K Gregersen (2006), "Microsatellite typing for DRB1 alleles: application to the analysis of HLA associations with rheumatoid arthritis", Genes and Immunity, 7:533-543.
    [abstract] [PDF]

  17. Wentian Li (2006), "The-more-the-better and the-less-the-better" (editorial), Bioinformatics, 22(18):2187-2188.
    [abstract] [PDF]

  18. Wentian Li, P Miramontes (2006), "Large-scale oscillation of structure-related DNA sequence features in human chromosome 21", Physical Review E, 74:021912.
    [abstract] [PDF]

  19. Wentian Li, Mingyi Wang, Patricia Irigoyen, Peter K Gregersen (2006), "Inferring causal relationships among intermediate phenotypes and biomarkers: a case study of rheumatoid arthritis", Bioinformatics, 22(12):1503-1507.
    [abstract] [PDF]

  20. N Matsuoka, A Patki, HK Tiwari, DB Allison, SB Johnson, Peter K Gregersen, RL Leibel, WK Chung (2006), "Association of K121Q polymorphism in ENPP1 (PC-1) with BMI in Caucasian and African-American adults", International Journal of Obesity, 30(2):233-237.
    [abstract]

  21. Michael F Seldin, Russell Shigeta, Pablo Villoslada, Carlo Selmi, Jaakko Tuomilehto, Gabriel Silva, John W Belmont, Lars Klareskog, Peter Gregersen (2006), "European population substructure: clustering of Northern and Southern populations", PLoS Genetics, 2(9):e143.
    [ html ]

  22. E Shi, W Fury, Wentian Li, W Mikulka, T Aldrich, A Rafique, G Chen, S Hoffenberg, TJ Daly, C Radziejewski (2006) "Monoclonal antibody classification based on epitope binding using differential antigen disruption", Journal of Immunological Methods, 314:9-20.
    [abstract] [PDF]

  23. Annette HM van der Helm-van Mil, Marlena Kern, Peter K Gregersen , Tom WJ Huizinga (2006), "Variation in radiologic joint destruction in rheumatoid arthritis differs between monozygotic and dizygotic twins and pairs of unrelated patients", Arthritis & Rheumatism, 54(6):2028-2030.
    [abstract] [PDF]

  24. SP Wu, L Leng, Z Feng, N Liu, H Zhao, C McDonald, Annette Lee , FC Arnett, Peter K Gregersen , MD Mayes, R Bucala (2006), "Macrophage migration inhibitory factor promoter polymorphisms and the clinical expression of scleroderma", Arthritis & Rheumatism, 54(11):3661-3669.
    [abstract] [PDF]
2005

  1. Angela Addo, Julie Le, Wentian Li, Ivona Aksentijevich, James Balow Jr, Annette Lee, Peter K Gregersen, Daniel L Kastner, Elaine F Remmers (2005), "Analysis of CARD15/NOD2 haplotypes fails to identify common variants associated with rheumatoid arthritis susceptibility", Scandinavian Journal of Rheumatology, 34(3):198-203.
    [ abstract] [PDF]

  2. Franak M Batliwalla, Emily C Baechler, Xiangli Xiao, Wentian Li, S Balasubramaniuan, Houman Khalili, Aarti Damle, Ward A Ortmann, A Perrone, AB Kantor, Percio S Gulko, Marlena Kern, R Furie, Timothy W Behrens, Peter K Gregersen (2005) "Peripheral blood gene expression profiling in rheumatoid arthritis" Genes and Immunity, 6(5):388-397.
    [abstract] [PDF] [supplementary information]

  3. Franak M Batliwalla, Wentian Li, Christopher T Ritchlin, Xiangli Xiao, Max Brenner, Teresina Laragione, Tianmeng Shao, Robert Durham, Sunil Kemshetti, Edward Schwarz, Rodney Coe, Marlena Kern, Emily C Baechler, Timothy W Behrens, Peter K Gregersen, Percio S Gulko (2005), "Microarray analyses of peripheral blood cells identifies unique expression signature in psoriatic arthritis", Molecular Medicine, 11(1-12):21-29.
    [abstract] [PDF]

  4. TW Behrens, RR Graham, C Kyogoku, EC Baechler, PS Ramos, C Gillett, J Bauer, WA Ortmann, KL Hippen, E Peterson, CD Langefeld, KL Moser, PM Gaffney, Peter K Gregersen (2005), "Progress towards understanding the genetic pathogenesis of systemic lupus erythematosus", in The Genetics of Autoimmunity (Novartis Foundation Symposium No. 267), eds. Gregory Bock, Jamie Goode, pp.145-160. discussion pp. 160-164 (Wiley).

  5. Max Brenner, Hsiang-Chi Meng, Nuriza C Yarlett, B Joe, MM Griffiths, EF Remmers, RL Wilder, Percio S Gulko (2005), "The Non-MHC Quantitative Trait Locus Cia5 Contains Three Major Arthritis Genes That Differentially Regulate Disease Severity, Pannus Formation, and Joint Damage in Collagen- and Pristane-Induced Arthritis", Journal of Immunology, 174(12):7894-7903.
    [ abstract]

  6. Max Brenner, Hsiang-Chi Meng, Nuriza C Yarlett, MM Griffiths, EF Remmers, RL Wilder, Percio S Gulko (2005), "The non-major histocompatibility complex quantitative trait locus Cia10 contains a major arthritis gene and regulates disease severity, pannus formation, and joint damage", Arthritis & Rheumatism, 52(1): 322-32.
    [abstract] [PDF]

  7. VE Carlton, X Hu, AP Chokkalingam, SJ Schrodi, R Brandon, HC Alexander, M Chang, JJ Catanese, DU Leong, KG Ardlie, DL Kastner, MF Seldin, LA Criswell, Peter K Gregersen, E Beasley, G Thomson, CI Amos, AB Begovich (2005), "PTPN22 genetic variation: evidence for multiple variants associated with rheumatoid arthritis", American Journal of Human Genetics, 77(4):567-581.
    [abstract] [PDF]

  8. Lindsey A Criswell, Peter K gregersen (2005), "Current understanding of the genetic aetiology of rheumatoid arthritis and likely future developments", Rheumatology, 44(suppl 4):iv9-iv13.
    [abstract]

  9. Lindsey A Criswell, Kirsten A Pfeiffer, Raymond F Lum, Bonnie Gonzales, Jill Novitzke, Marlena Kern, Kathy L Moser, Ann B Begovich, Victoria EH Carlton, Wentian Li, Annette T Lee, Ward Ortmann, Timothy W Behrens, Peter K Gregersen (2005), "Analysis of families in the Multiple Autoimmune Disease Genetics Consortium (MADGC): the PTPN22 620W allele associates with multiple autoimmune phenotypes", American Journal of Human Genetics, 76:561-571.
    [abstract] [PDF]

  10. Peter K Gregersen (2005), "Gaining insight into PTPN22 and autoimmunity" (news and views), Nature Genetics, 37(12):1300-1302.
    [abstract] [PDF]

  11. Peter K Gregersen (2005), "Pathways to gene identification in rheumatoid arthritis: PTPN22 and beyond", Immunological Review, 204(1):74-86.
    [abstract] [PDF]

  12. Peter K Gregersen, Franak Batliwalla (2005), "PTPN22 and rheumatoid arthritis: gratifying replication" (editorial), Arthritis & Rheumatism, 52(7):1952-1955.
    [abstract] [PDF]

  13. MA Hofmann, Q Yang, E Harja, P Kedia, Peter K Gregersen , LA Cupples, AM Schmidt, BI Hudson (2005), "The RAGE Gly82Ser polymorphism is not associated with cardiovascular disease in the Framingham offspring study", Atherosclerosis, 182(2):301-305.
    [PDF]

  14. TW Huizinga, CI Amos, AH van der Helm-van Mil, W Chen, FA van Gaalen, D Jawaheer, GM Schreuder, M Wener, FC Breedveld, N Ahmad, RF Lum, RR de Vries, Peter K Gregersen , RE Toes, LA Criswell (2005), "Refining the complex rheumatoid arthritis phenotype based on specificity of the HLA-DRB1 shared epitope for antibodies to citrullinated proteins", Arthritis & Rheumatism , 52(11):3433-3438.
    [abstract] [PDF]

  15. Patricia Irigoyen, Annette T Lee, Mark H Wener, Wentian Li, Marlena Kern, Franak Batliwalla, Raymond F Lum, Elena Massarotti, Michael Weisman, Claire Bombardier, Elaine F Remmers, Daniel L Kastner, Michael F Seldin, Lindsey A Criswell, Peter K Gregersen (2005), "Regulation of anti-cyclic citrullinated peptide antibodies in rheumatoid arthritis: contrasting effects of HLA-DR3 and the shared epitope alleles", Arthritis & Rheumatism , 52(12):3813-3818.
    [abstract] [PDF]

  16. Annette T Lee, Wentian Li, Anthony Liew, Claire Bombardier, Michael Weisman, Elena M Massarotti, Jeffrey Kent, Frederick Wolfe, Ann Begovich, Peter K Gregersen (2005), "The PTPN22 R620W polymorphism associates with RF positive rheumatoid arthritis in a dose-dependent manner but not with HLA-SE status", Genes and Immunity, 6(2):129-133.
    [abstract] [PDF]

  17. Wentian Li, Dirk Holste (2005), "Universal 1/f noise , crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome", Physical Review E, 71:041910.
    [abstract] [PDF]

  18. Robert M Plenge, Leonid Padyukov, Elaine Remmers, Shaun Purcell, Annette T Lee , Elizabeth W Karlson, Frederick Wolfe, Daniel L Kasner, Lrs Alfredsson, David Altshuler, Peter K Gregersen, Lars Klareskog, John D Rioux (2005), "Replication of putative candidate-gene associations with rheumatoid arthritis in > 4,000 samples from North America and Sweden: association of susceptibility with PTPN22, CTLA4, and PADI4", American Journal of Human Genetics, 77:1044-1060.
    [abstract] [PDF]

  19. Ayse Ulgen, Wentian Li (2005), "Comparing single-nucleotide-polymorphism marker-based and microsatellite marker-based linkage analyses", BMC Genetics, 6(suppl 1):S13.
    [abstract] [PDF]

  20. N Yang, H Li, LA Criswell, Peter K Gregersen , ME Alarcon-Riquelme, R Kittles, R Shigeta, G Silva, PI Patel, JW Belmont, MF Seldin (2005), "Examination of ancestry and ethnic affiliation using highly informative diallelic DNA markers: application to diverse and admixed populations and implications for clinical epidemiology and forensic medicine", Human Genetics, 118(3-4):382-392.
    [abstract] [PDF]
2004

  1. EC Baechler, Franak M Batliwalla, G Karypis, PM Gaffney, K Moser, WA Ortmann, KJ Espe, S Balasubramanian, KM Hughes, JP Chan, A Begovich, SY Chang, Peter K Gregersen, TW Behrens (2004), "Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation", Genes and Immunity, 5(5):347-353.
    [abstract] [PDF]

  2. EC Baechler, Peter K Gregersen, TW Behrens (2004), "The emerging role of interferon in human systemic lupus erythematosus", Current Opinion in Immunology, 16(6):801-807.
    [abstract] [PDF]

  3. Ann B Begovich, Victoria EH Carlton, Lee A Honigberg, Steven J Schrodi, Anand P Chokkalingam, Heather C Alexander, Kristin G Ardlie, Qiqing Huang, Ashley M Smith, Jill M Spoerke, Marion T Conn, Monica Chang, Sheng-Yung P Chang, Randall K Saiki, Joseph J Catanese, Diane U Leong, Veronica E Garcia, Linda B McAllister, Douglas A Jeffery, Annette T Lee, Franak Batliwalla, Elaine Remmers, Lindsey A Criswell, Michael F Seldin, Daniel L Kastner, Christopher I Amos, John J Sninsky, Peter K Gregersen (2004), "A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis", American Journal of Human Genetics, 75:330-337.
    [abstract] [PDF]

  4. RN Damle, Franak M Batliwalla, F Ghiotto, A Valetto, E Albesiano, C Sison, SL Allen, J Kolitz, VP Vinciguerra, P Kudalkar, T Wasil, KR Rai, M Ferrarini, Peter K Gregersen, N Chiorazzi (2004), "Telomere length and telomerase activity delineate distinctive replicative features of the B-CLL subgroups defined by immunoglobulin V gene mutations", Blood, 103(2):375-382.
    [abstract] [PDF]

  5. JD Halley, AC Warden, S Sadedin, Wentian Li (2004), "Rapid self-organized criticality: fractal evolution in extreme environments", Physical Review E, 70:036118.
    [abstract] [PDF]

  6. Damini Jawaheer , Raymond F Lum, Christopher I Amos, Peter K Gregersen , Lindsey A Criswell (2004), "Clustering of disease features within 512 multicase rheumatoid arthritis families", Arthritis & Rheumatism, 50(3):736-741.
    [abstract] [PDF]

  7. AS Karban, T Okazaki, CI Panhuysen, T Gallegos, JJ Potter, JE Bailey-Wilson, MS Silverberg, RH Duerr, JH Cho, Peter K Gregersen, Y Wu, JP Achkar, T Dassopoulos, E Mezey, TM Bayless, FJ Nouvet, SR Brant (2004), "Functional annotation of a novel NFKB1 promoter polymorphism that increases risk for ulcerative colitis", Human Molecular Genetics, 13(1):35-45.
    [abstract]

  8. MS Killian, Joanita Monteiro, J Matud, LE Hultin, MA Hausner, OO Yang, Peter K Gregersen, R Detels, JV Giorgi, BD Jamieson (2004), "Persistent alterations in the T-cell repertoires of HIV-1-infected and at-risk uninfected men", AIDS, 18(2):161-170.

  9. C Kyogoku, CD Langefeld, WA Ortmann, Annette Lee, S Selby, VE Carlton, M Chang, P Ramos, EC Baechler, Franak M Batliwalla , J Novitzke, AH Williams, C Gillett, P Rodine, RR Graham, KG Ardlie, PM Gaffney, KL Moser, M Petri, AB Begovich, Peter K Gregersen , TW Behrens (2004), "Genetic Association of the R620W Polymorphism of Protein Tyrosine Phosphatase PTPN22 with Human SLE", American Journal of Human Genetics, 75(3):504-507.
    [PDF]

  10. Wentian Li, Peter K Gregersen (2004), "Reconstructing haplotypes in pedigrees: importance of parental information", American Journal of Medical Genetics, 124A:107-109.
    [abstract] [PDF]

  11. Wentian Li, D Holste (2004), "Spectral analysis of guanine and cytosine fluctuations of mouse genomic DNA", Fluctuation and Noise Letters, 4(3):L453-L464.
    [abstract] [PDF]

  12. Wentian Li, D Holste (2004), "An unusual 500,000 bases long oscillation of guanine and cytosine content in human chromosome 21", Computational Biology and Chemistry, 28(5-6):393-399.
    [PDF]

  13. Wentian Li, F Sun, I Grosse (2004), "Extreme-value distribution based gene selection criteria for discriminant microarray data analysis using logistic regression", Journal of Computational Biology, 11(2-3):215-226.
    [abstract] [PDF]

  14. Hsiang-Chi Meng, MM Griffiths, EF Remmers, Y Kawahito, Wentian Li, R Neisa, GW Cannon, RL Wilder, Percio S Gulko (2004), "Identification of two novel female-specific non-MHC loci regulating collagen-induced arthritis severity and chronicity, and evidence for epistasis", Arthritis & Rheumatism, 50(8):2695-2705.
    [abstract] [PDF]

  15. CN Metz, Peter K Gregersen , AK Malhotra (2004), "Metabolism and biochemical effects of nicotine for primary care providers", Med Clin North Am. 88(6):1399-1413.

  16. Mitchell MK, Peter K Gregersen, Johnson S, Parsons R, Vlahov D (2004), "The new york cancer project: rationale, organization, design, and baseline characteristics", Journal of Urban Health, 81(2):301-310.
    [abstract]

  17. GS Smith, FE Lotrich, AK Malhotra, Annette T Lee, Y Ma, E Kramer, Peter K Gregersen , D Eidelberg, BG Pollock (2004), "Effects of Serotonin Transporter Promoter Polymorphisms on Serotonin Function", Neuropsychopharmacology, 29:2226-2234.
    [abstract]
2003

  1. EC Baechler, Franak M Batliwalla, G Karypis, PM Gaffney, WA Ortmann, KJ Espe, KB Shark, WJ Grande, KM Hughes, V Kapur, Peter K Gregersen, TW Behrens (2003), "Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus", Proceedings of National Academy of Sciences, 100(5):2610-2615.
    [abstract] [PDF]

  2. Peter K Gregersen (2003), "Teasing apart the complex genetics of human autoimmunity: lessons from rheumatoid arthritis", Clinical Immunology, 107(1):1-9.
    [abstract]

  3. Peter K Gregersen, TW Behrens (2003), "Fine mapping the phenotype in autoimmune disease: the promise and pitfalls of DNA microarray technologies", Genes and Immunity, 4(3):175-176.
    [abstract] [PDF]

  4. Peter K Gregersen, Bucala R (2003), "Macrophage migration inhibitory factor, MIF alleles, and the genetics of inflammatory disorders: incorporating disease outcome into the definition of phenotype", Arthritis & Rheumatism, 48(5):1171-1176.
    [abstract] [PDF]

  5. Damini Jawaheer, Juo SH, Le Caignec C, David A, Petit C, Peter K Gregersen, Dowbak S, Aarti Damle, McElreavey K, Ostrer H (2003), "Mapping a gene for 46,XY gonadal dysgenesis by linkage analysis", Clinical Genetics, 63(6):530-535.
    [PDF]

  6. Damini Jawaheer, Seldin MF, Amos CI, Chen WV, Shigeta R, Etzel C, Aarti Damle, Xiangli Xiao , Chen D, Lum RF, Joanita Monteiro, Marlena Kern , Criswell LA, Albani S, Nelson JL, Clegg DO, Pope R, Schroeder HW Jr, Bridges SL Jr, Pisetsky DS, Ward R, Kastner DL, Wilder RL, Pincus T, Callahan LF, Flemming D, Wener MH, Peter K Gregersen, for the North American Rheumatoid Arthritis Consortium (2003), "Screening the genome for rheumatoid arthritis susceptibility genes: a replication study and combined analysis of 512 multicase families", Arthritis & Rheumatism, 48(4):906-916.
    [abstract] [PDF]

  7. Wentian Li , Bernaola-Galvan P, Carpena P, Oliver JL (2003), "Isochores merit the prefix 'iso'" , Computational Biology and Chemistry, 27(1):5-10.
    [abstract] [PDF]

  8. Wentian Li , Grosse I (2003) "Gene selection criterion for discriminant microarray data analysis based on extreme value distributions", RECOMB03: Proceedings of the Seventh Annual International Conference on Computational Biology, pp. 217-223 (ACM Press).
    [PDF]

  9. Kenneth Offit, Heather Pierce, Tomas Kirchhoff, Prema Kolachana, Beth Rapaport, Peter K Gregersen, Steven Johnson, Orit Yossepowitch, Helen Huang, Jaya Satagopan, Mark Robson, Lauren Scheuer, Khedoudja Nafa, Nathan Ellis (2003), "Frequency of CHEK2*1100delC in New York breast cancer cases and controls", BMC Medical Genetics, 4:1.
    [abstract]

  10. Pillemer S, Percio Gulko, Ligier S, Yarboro C, Gourley M, Goldbach-Mansky R, Siegel R, Hirsch R, Pucino F, Tilley B, Wilder RL (2003), "Pilot clinical trial of intravenous doxycycline versus placebo for rheumatoid arthritis", Journal of Rheumatology, 30(1):41-43.
    [abstract] [PDF]

  11. Sanchez-Carbayo M, Socci N, Lozano JJ, Wentian Li , Belbin T, Preystowski M, Ortiz A, Childs G, Cordon-Cardo C (2003) "Gene discovery in bladder cancer progression using cDNA microarrays", American Journal of Pathology, 163:505-516.
    [abstract] [PDF]

  12. Ulgen A, Han Z, Wentian Li (2003), "Correlation between quantitative traits and correlation between corresponding LOD scores: detection of pleiotropic effects", BMC Genetics, 4(suppl 1):S60.
    [abstract] [PDF]

  13. Ulloa L, Franak M Batliwalla, Andersson U, Peter K Gregersen, Tracey KJ (2003), "High mobility group box chromosomal protein 1 as a nuclear protein, cytokine, and potential therapeutic target in arthritis", Arthritis & Rheumatism, 48(4):876-881.
    [abstract] [PDF]
2002

  1. Azad RK, Rao JS, Wentian Li , Ramaswamy R (2002), "Simplifying the mosaic description of DNA sequences", Physical Review E, 66:031913.
    [abstract] [PDF]

  2. Baugh JA, Smita Chitnis, Donnelly SC, Joanita Monteiro, Lin X, Plant BJ, Wolfe F, Peter K Gregersen, Bucala R (2002), "A functional promoter polymorphism in the macrophage migration inhibitory factor (MIF) gene associated with disease severity in rheumatoid arthritis", Genes and Immunity, 3(3):170-176.
    [abstract]

  3. Chavan SS, Tian W, Hsueh K, Damini Jawaheer, Peter K Gregersen, Chu CC (2002), "Characterization of the human homolog of the IL-4 induced gene-1 (Fig1)", Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, 1576(1-2):70-80.
    [abstract]

  4. Fang LJ, Wentian Li , Chalhoub N, Feingold J, Ortenberg J, Thirion J-P (2002), "Linkage disequilibrium and founder effect analysis of the NF1 gene in French Canadians from the Quebec population", Annales de Genetique, 45:39-44.
    [abstract] [PDF]

  5. Foulkes WD, Thiffault I, Gruber SB, Horwitz M, Hamel N, Lee C, Shia J, Markowitz A, Figer A, Friedman E, Farber D, Greenwood CM, Bonner JD, Nafa K, Walsh T, Marcus V, Tomsho L, Gebert J, Macrae FA, Gaff CL, Paillerets BB, Peter K Gregersen, Weitzel JN, Gordon PH, MacNamara E, King MC, Hampel H, De La Chapelle A, Boyd J, Offit K, Rennert G, Chong G, Ellis NA (2002), "The founder mutation MSH2*1906G-->C is an important cause of hereditary nonpolyposis colorectal cancer in the Ashkenazi Jewish population", American Journal of Human Genetics, 71(6):1395-1412.
    [PDF]

  6. RR Graham, WA Ortmann, CD Langefeld, Damini Jawaheer, SA Selby, PR Rodine, EC Baechler, KE Rohlf, KB Shark, KJ Espe, LE Green, RP Nair, PE Stuart, JT Elder, RA King, KL Moser, PM Gaffney, TL Bugawan, HA Erlich, SS Rich, Peter K Gregersen, TW Behrens (2002), "Visualizing human leukocyte antigen class II risk haplotypes in human systemic lupus erythematosus", American Journal of Human Genetics, 71(3):543-553.
    [PDF]

  7. Gruber SB, Ellis NA, Scott KK, Almog R, Kolachana P, Bonner JD, Kirchhoff T, Tomsho LP, Nafa K, Pierce H, Low M, Satagopan J, Rennert H, Huang H, Greenson JK, Groden J, Rapaport B, Shia J, Johnson S, Peter K Gregersen, Harris CC, Boyd J, Rennert G, Offit K (2002), "BLM heterozygosity and the risk of colorectal cancer" (brevia), Science, 297(5589):2013.
    [ abstract] [PDF]

  8. Han Z, Heath SC, Shmulewitz D, Wentian Li , Auerbach SB, Blundell ML, Lehner T, Ott J, Stoffel M, Friedman JM, Breslow JL (2002), "Candidate genes involved in cardiovascular risk factors by a family-based association study on the island of Kosrae, Federated States of Micronesia", American Journal of Medical Genetics, 110(3):234-242.
    [PDF]

  9. Hofmann MA, Drury S, Hudson BI, Gleason MR, Qu W, Lu Y, Lalla E, Smita Chitnis, Joanita Monteiro, Stickland MH, Bucciarelli LG, Moser B, Moxley G, Itescu S, Grant PJ, Peter K Gregersen, Stern DM, Schmidt AM (2002), "RAGE and arthritis: the G82S polymorphism amplifies the inflammatory response", Genes and Immunity, 3(3):123-135.
    [abstract]

  10. Ivanova S, Franak Batliwalla, Mocco J, Kiss S, Huang J, Mack W, Coon A, Eaton JW, Al-Abed Y, Peter K Gregersen, Shohami E, Connolly ES Jr, Tracey KJ (2002), "Neuroprotection in cerebral ischemia by neutralization of 3-aminopropanal", Proceedings of National Academy of Sciences, 99(8):5579-5584.
    [abstract] [PDF]

  11. Damini Jawaheer, Peter K Gregersen (2002), "Rheumatoid arthritis. The genetic components", Rheumatic Diseases Clinics of North America, 28(1):1-15, v. Review.

  12. Damini Jawaheer, Peter K Gregersen (2002), "The search for rheumatoid arthritis susceptibility genes: a call for global collaboration" (editorial), Arthritis & Rheumatism, 46(3):582-584.
    [abstract] [PDF]

  13. Damini Jawaheer, Wentian Li, Graham RR, Chen W, Aarti Damle, Xiangli Xiao, Joanita Monteiro, Houman Khalili, Annette Lee, Robert Lundsten, Begovich A, Bugawan T, Erlich H, Elder JT, Criswell LA, Seldin MF, Amos CI, Behrens TW, Peter K Gregersen (2002), "Dissecting the genetic complexity of the association between human leukocyte antigens and rheumatoid arthritis", American Journal of Human Genetics, 71(3):585-594.
    [abstract] [PDF]

  14. Joe B, Cannon GW, Griffiths MM, Dobbins DE, Percio S Gulko, Wilder RL, Remmers EF (2002), "Evaluation of quantitative trait loci regulating severity of mycobacterial adjuvant-induced arthritis in monocongenic and polycongenic rats: identification of a new regulatory locus on rat chromosome 10 and evidence of overlap with rheumatoid arthritis susceptibility loci", Arthritis & Rheumatism, 46(4):1075-1085.
    [abstract] [PDF]

  15. Wentian Li (2002), "Zipf's law everywhere", Glottometrics, 5:14-21.
    [PDF]

  16. Wentian Li (2002), "Are isochore sequences homogeneous?", Gene, 300(1-2):129-139.
    [abstract] [PDF]

  17. Wentian Li , Bernaola-Galvan P, Haghighi F, Grosse I (2002), "Applications of recursive segmentation to the analysis of DNA sequences" Computers & Chemistry (genome and informatics special issue), 26(5):491-510.
    [abstract] [PDF]

  18. Wentian Li , Yang Y (2002), "Zipf's law in importance of genes for cancer classification using microarray data", Journal of Theoretical Biology, 219(4):539-551.
    [abstract] [PDF]

  19. Wentian Li , Yang Y (2002), "How many genes are needed for a discriminant microarray data analysis", in Methods of Microarray Data Analysis , eds SM Lin and KF Johnson (Kluwer Academic), pp.137-150
    [PDF]

  20. Remmers EF, Joe B, Griffiths MM, Dobbins DE, Dracheva SV, Hashiramoto A, Furuya T, Salstrom JL, Wang J, Percio S Gulko, Cannon GW, Wilder RL (2002), "Modulation of multiple experimental arthritis models by collagen-induced arthritis quantitative trait loci isolated in congenic rat lines: different effects of non-major histocompatibility complex quantitative trait loci in males and females", Arthritis & Rheumatism, 46(8):2225-2234.
    [abstract] [PDF]

  21. Slager SL, Carleu L, Chung WK, Jackson T, Winchester RJ, Hodge SE, Percio S Gulko (2002), "The IDDM13 region containing the insulin-like growth factor binding protein-5 (IGFBP5) gene on chromosome 2q33-q36 and the genetic susceptibility to rheumatoid arthritis", Genes and Immunity, 3(2):110-113.
    [abstract]
2001

  1. Franak M Batliwalla, Damle RN, Metz C, Chiorazzi N, Peter K Gregersen (2001), "Simultaneous flow cytometric analysis of cell surface markers and telomere length: analysis of human tonsilar B cells", Journal of Immunological Methods, 247(1-2):103-109.
    [abstract]

  2. Peter K Gregersen (2001), "Genetics and rheumatic diseases: rheumatoid arthritis and ankylosing spondylitis: The genetics of rheumatoid arthritis", Bulletin on Rheumatic Diseases, 50(2):1-2.

  3. Peter K Gregersen, Elena Kowalsky, Kohn N, Marvin EW (2001), "Early childhood music education and predisposition to absolute pitch: teasing apart genes and environment", American Journal of Medical Genetics, 98(3):280-282.
    [PDF]

  4. Damini Jawaheer, Seldin MF, Amos CI, Chen WV, Shigeta R, Joanita Monteiro, Marlena Kern , Criswell LA, Albani S, Nelson JL, Clegg DO, Pope R, Schroeder HW Jr, Bridges SL Jr, Pisetsky DS, Ward R, Kastner DL, Wilder RL, Pincus T, Callahan LF, Flemming D, Wener MH, Peter K Gregersen (2001), "A genomewide screen in multiplex rheumatoid arthritis families suggests genetic overlap with other autoimmune diseases", American Journal of Human Genetics, 68(4):927-936.
    [PDF]
2000

  1. Franak M Batliwalla, Rufer N, Lansdorp PM, Peter K Gregersen (2000), "Oligoclonal expansions in the CD8(+)CD28(-) T cells largely explain the shorter telomeres detected in this subset: analysis by flow FISH", Human Immunology, 61(10):951-958.
    [abstract] [PDF]

  2. Smita Chitnis, Joanita Monteiro, Glass D, Apatoff B, Salmon J, Concannon P, Peter K Gregersen (2000), "The role of X-chromosome inactivation in female predisposition to autoimmunity", Arthritis Research, 2(5):399-406.
    [ abstract]

  3. Damle RN, Fais F, Ghiotto F, Valetto A, Albesiano E, Wasil T, Franak M Batliwalla, Allen SL, Schulman P, Vinciguerra VP, Rai KR, Peter K Gregersen, Ferrarini M, Chiorazzi N (2000), "Chronic lymphocytic leukemia: a proliferation of B cells at two distinct stages of differentiation", in B1 Lymphocytes in B Cell Neoplasia: 16th Workshop on the Mechanisms of B Cell Neoplasia 1999 (Current Topics in Microbiology and Immunology, Vol 252), ed. M Potter, F Melchers, pp.285-292 (Springer).

  4. Peter K Gregersen (2000), "Pregnant with controversy" (editorial), Journal of Rheumatology, 27(12):2738-2739.
    [html]

  5. Peter K Gregersen, RA Felder (2000), "Searching for gene-environment interactions in cancer", JALA, 5(5):37-39.
1999

  1. Smita Chitnis, Derom C, Vlietinck R, Derom R, Joanita Monteiro, Peter K Gregersen (1999), "X chromosome-inactivation patterns confirm the late timing of monoamniotic-MZ twinning" (letters to the editor), American Journal of Human Genetics, 65(2):570-571.
    [PDF]

  2. Peter K Gregersen (1999), "Genetics of rheumatoid arthritis: confronting complexity", Arthritis Research, 1(1):37-44.
    [abstract]

  3. Peter K Gregersen, Smita Chitnis, Joanita Monteiro, Salmon J (1999), "Increased X-inactivation skewing in SLE?", Immunology Today, 20(3):152.
    [abstract]

  4. Peter K Gregersen, Elena Kowalsky, Kohn N, Marvin EW (1999), "Absolute pitch: prevalence, ethnic variation, and estimation of the genetic component" (letters to the editor), American Journal of Human Genetics, 65(3):911-913.
    [PDF]

  5. Hirose N, Williams R, Alberts AR, Furie RA, Chartash EK, Jain RI, Sison C, Lahita RG, Merrill JT, Cucurull E, Gharavi AE, Sammaritano LR, Salmon JE, Hashimoto S, Sawada T, Chu CC, Peter K Gregersen, Chiorazzi N (1999), "A role for the polymorphism at position 247 of the beta2-glycoprotein I gene in the generation of anti-beta2-glycoprotein I antibodies in the antiphospholipid syndrome", Arthritis & Rheumatism, 42(8):1655-1661.
    [abstract] [PDF]

  6. Seldin MF, Amos CI, Ward R, Peter K Gregersen (1999), "The genetics revolution and the assault on rheumatoid arthritis", Arthritis & Rheumatism, 42(6):1071-1079.
    [abstract] [PDF]

  7. Than S, Kharbanda M, Chitnis V, Bakshi S, Peter K Gregersen, Pahwa S (1999), "Clonal dominance patterns of CD8 T cells in relation to disease progression in HIV-infected children", Journal of Immunology, 162(6):3680-3686.
    [abstract] [PDF]
1998

  1. Franak M Batliwalla, Bateman BA, Davide Serrano , Murray D, Macphail S, Maino VC, Ansel JC, Peter K Gregersen, Armstrong CA (1998), "A 15-year follow-up of AJCC stage III malignant melanoma patients treated postsurgically with Newcastle disease virus (NDV) oncolysate and determination of alterations in the CD8 T cell repertoire", Molecular Medicine, 4(12):783-794.
    [abstract]

  2. Eiraku N, Hingorani R, Ijichi S, Machigashira K, Peter K Gregersen, Joanita Monteiro, Usuku K, Yashiki S, Sonoda S, Osame M, Hall WW (1998), "Clonal expansion within CD4+ and CD8+ T cell subsets in human T lymphotropic virus type I-infected individuals", Journal of Immunology, 161(12):6674-6680.
    [abstract] [PDF]

  3. Peter K Gregersen (1998), "Instant recognition: the genetics of pitch perception", American Journal of Human Genetics, 62(2):221-223.
    [PDF]

  4. Peter K Gregersen (1998), "The North American Rheumatoid Arthritis Consortium--bringing genetic analysis to bear on disease susceptibility, severity, and outcome", Arthritis Care Research, 11(1):1-2.

  5. Herbein G, Mahlknecht U, Franak Batliwalla, Peter K Gregersen, Pappas T, Butler J, O'Brien WA, Verdin E (1998), "Apoptosis of CD8+ T cells is mediated by macrophages through interaction of HIV gp120 with chemokine receptor CXCR4", Nature, 395(6698):189-194.
    [abstract]

  6. Ivanova S, Botchkina GI, Al-Abed Y, Meistrell M 3rd, Franak Batliwalla, Dubinsky JM, Iadecola C, Wang H, Peter K Gregersen, Eaton JW, Tracey KJ (1998), "Cerebral ischemia enhances polyamine oxidation: identification of enzymatically formed 3-aminopropanal as an endogenous mediator of neuronal and glial cell death", Journal of Experimental Medicine, 188(2):327-340.
    [abstract] [PDF]

  7. Joanita Monteiro, Derom C, Vlietinck R, Kohn N, Lesser M, Peter K Gregersen (1998), "Commitment to X inactivation precedes the twinning event in monochorionic MZ twins", American Journal of Human Genetics, 63(2):339-346.
    [PDF]
1997

  1. Mobini N, Yunis EJ, Alper CA, Yunis JJ, Delgado JC, Yunis DE, Firooz A, Dowlati Y, Bahar K, Peter K Gregersen, Ahmed AR (1997), "Identical MHC markers in non-Jewish Iranian and Ashkenazi Jewish patients with pemphigus vulgaris: possible common central Asian ancestral origin", Human Immunology, 57(1):62-67.
    [abstract]

  2. Patki V, Joanita Monteiro, Peter K Gregersen, Chiorazzi N (1997), "Evidence for B cell oligoclonality in the blood and joints of patients with rheumatoid arthritis", Annals of New York Academy of Sciences, 815:472-474.

  3. Davide Serrano, Joanita Monteiro, Allen SL, Kolitz J, Schulman P, Lichtman SM, Buchbinder A, Vinciguerra VP, Chiorazzi N, Peter K Gregersen (1997), "Clonal expansion within the CD4+CD57+ and CD8+CD57+ T cell subsets in chronic lymphocytic leukemia", Journal of Immunology, 158(3):1482-1489.
    [abstract] [PDF]
1996

  1. Franak Batliwalla, Joanita Monteiro, Davide Serrano, Peter K Gregersen (1996), "Oligoclonality of CD8+ T cells in health and disease: aging, infection, or immune regulation?", Human Immunology, 48(1-2):68-76.
    [abstract]

  2. Dono M, Hashimoto S, Fais F, Trejo V, Allen SL, Lichtman SM, Schulman P, Vinciguerra VP, Sellars B, Peter K Gregersen, Ferrarini M, Chiorazzi N (1996), "Evidence for progenitors of chronic lymphocytic leukemia B cells that undergo intraclonal differentiation and diversification", Blood, 87(4):1586-1594.
    [abstract] [PDF]

  3. Fais F, Sellars B, Ghiotto F, Yan XJ, Dono M, Allen SL, Budman D, Dittmar K, Kolitz J, Lichtman SM, Schulman P, Schuster M, Vinciguerra VP, Rai K, Stevenson FK, Peter K Gregersen, Ferrarini M, Chiorazzi N (1996), "Examples of in vivo isotype class switching in IgM+ chronic lymphocytic leukemia B cells", Journal of Clinical Investigation, 98(7):1659-1666.
    [abstract] [PDF]

  4. Hingorani R, Joanita Monteiro, Furie R, Chartash E, Navarrete C, Pergolizzi R, Peter K Gregersen (1996), "Oligoclonality of V beta 3 TCR chains in the CD8+ T cell population of rheumatoid arthritis patients", Journal of Immunology, 156(2):852-858.
    [abstract] [PDF]

  5. Damini Jawaheer, MacGregor AJ, Peter K Gregersen, Silman AJ, Ollier WE (1996), "Unexpected HLA haplotype sharing in dizygotic twin pairs discordant for rheumatoid arthritis", Journal of Medical Genetics, 33(12):1015-1018.

  6. Joanita Monteiro, Franak Batliwalla , Ostrer H, Peter K Gregersen (1996), "Shortened telomeres in clonally expanded CD28-CD8+ T cells imply a replicative history that is distinct from their CD28+CD8+ counterparts", Journal of Immunology, 156(10):3587-3590.
    [abstract] [PDF]

  7. Joanita Monteiro, Hingorani R, Peroglizzi R, Apatoff B, Peter K Gregersen (1996), "Oligoclonality of CD8+ T cells in multiple sclerosis", Autoimmunity, 23(2):127-138.
1995

  1. Peter K Gregersen, Hingorani R, Joanita Monteiro (1995), "Oligoclonality in the CD8+ T-cell population. Analysis using a multiplex PCR assay for CDR3 length", Annals of New York Academy of Sciences, 756:19-27.

  2. Gulwani-Akolkar B, Akolkar PN, Peter K Gregersen, Silver J. (1995), "Analysis of the peripheral blood T-cell receptor repertoire in monozygotic twins discordant for rheumatoid arthritis", Annals of New York Academy of Sciences, 756:176-178.

  3. Hashimoto S, Chiorazzi N, Peter K Gregersen (1995), "Alternative splicing of CD79a (Ig-alpha/mb-1) and CD79b (Ig-beta/B29) RNA transcripts in human B cells", Molecular Immunology, 32(9):651-659.
    [abstract]

  4. Hingorani R, Joanita Monteiro, Pergolizzi R, Furie R, Chartash E, Peter K Gregersen (1995), "CDR3 length restriction of T-cell receptor beta chains in CD8+ T-cells of rheumatoid arthritis patients", Annals of New York Academy of Sciences, 756:179-182.

  5. Joanita Monteiro, Hingorani R, Choi IH, Silver J, Pergolizzi R, Peter K Gregersen (1995), "Oligoclonality in the human CD8+ T cell repertoire in normal subjects and monozygotic twins: implications for studies of infectious and autoimmune diseases", Molecular Medicine , 1(6):614-624.
    [abstract]

  6. Joanita Monteiro, Hingorani R, Choi IH, Pergolizzi R, Silver J, Peter K Gregersen (1995), "Variability in CD8+ T-cell oligoclonality patterns in monozygotic twins", Annals of New York Academy of Sciences, 756:96-98.

  7. Joanita Monteiro, Hingorani R, Pergolizzi R, Apatoff B, Peter K Gregersen (1995), "Clonal dominance of CD8+ T-cell in multiple sclerosis", Annals of New York Academy of Sciences, 756:310-312.

  8. Morley JK, Franak M Batliwalla, Hingorani R, Peter K Gregersen (1995), "Oligoclonal CD8+ T cells are preferentially expanded in the CD57+ subset", Journal of Immunology, 154(11):6182-6190.
    [abstract] [PDF]
1994

  1. Hashimoto S, Chiorazzi N, Peter K Gregersen (1994), "The complete sequence of the human CD79b (Ig beta/B29) gene: identification of a conserved exon/intron organization, immunoglobulin-like regulatory regions, and allelic polymorphism", Immunogenetics, 40(2):145-149.

  2. Hashimoto S, Mohrenweiser HW, Peter K Gregersen, Chiorazzi N (1994), "Chromosomal localization, genomic structure, and allelic polymorphism of the human CD79 alpha (Ig-alpha/mb-1) gene", Immunogenetics, 40(4):287-295.

  3. Trejo V, Derom C, Vlietinck R, Ollier W, Silman A, Ebers G, Derom R, Peter K Gregersen (1994), "X chromosome inactivation patterns correlate with fetal-placental anatomy in monozygotic twin pairs: implications for immune relatedness and concordance for autoimmunity", Molecular Medicine, 1(1):62-70.
    [abstract]
1993

  1. Peter K Gregersen (1993), "Discordance for autoimmunity in monozygotic twins. Are "identical" twins really identical?" Arthritis & Rheumatism, 36(9):1185-1192.

  2. Hashimoto S, Peter K Gregersen, Chiorazzi N (1993), "The human Ig-beta cDNA sequence, a homologue of murine B29, is identical in B cell and plasma cell lines producing all the human Ig isotypes", Journal of Immunology, 150(2):491-498.
    [abstract] [PDF]

  3. Hingorani R, Choi IH, Akolkar P, Gulwani-Akolkar B, Pergolizzi R, Silver J, Peter K Gregersen (1993), "Clonal predominance of T cell receptors within the CD8+ CD45RO+ subset in normal human subjects", Journal of Immunology, 151(10):5762-5769.
    [abstract] [PDF]

  4. Molkentin J, Peter K Gregersen, Lin X, Zhu N, Wang Y, Wang Y, Chen S, Chen S, Baxter-Lowe LA, Silver J (1993), "Molecular analysis of HLA-DR beta and DQ beta polymorphism in Chinese with rheumatoid arthritis", Annals of the Rheumatic Diseases, 52(8):610-612.
    [abstract]
1992

  1. Peter K Gregersen (1992), "T-cell receptor-major histocompatibility complex genetic interactions in rheumatoid arthritis", Rheumatic Diseases Clinics of North America, 18(4):793-807.

  2. Peter K Gregersen (1992), "HLA associations with rheumatoid arthritis: a piece of the puzzle", Journal of Rheumatology, 19(supplement 32):7-11.
1991

  1. Gulwani-Akolkar B, Posnett DN, Janson CH, Grunewald J, Wigzell H, Akolkar P, Peter K Gregersen, Silver J (1991), "T cell receptor V-segment frequencies in peripheral blood T cells correlate with human leukocyte antigen type", Journal of Experimental Medicine, 174(5):1139-1146.
    [abstract] [PDF]

  2. Kaufman LD, Gruber BL, Peter K Gregersen (1991), "Clinical follow-up and immunogenetic studies of 32 patients with eosinophilia-myalgia syndrome", Lancet, 337(8749):1071-1074.
1990

  1. Celis E, Karr RW, Peter K Gregersen, Reinsmoen NL (1990), "Functional analysis of MHC class II-restricted T cells derived from a Caucasian with a DR4, Dw15, DQw8 haplotype", Human Immunology, 29(1):31-41.
    [abstract]

  2. Itescu S, Brancato LJ, Buxbaum J, Peter K Gregersen, Rizk CC, Croxson TS, Solomon GE, Winchester R (1990), "A diffuse infiltrative CD8 lymphocytosis syndrome in human immunodeficiency virus (HIV) infection: a host immune response associated with HLA-DR5", Annals of Internal Medicine, 112(1):3-10.

  3. Lang B, Navarrete C, LoGalbo PR, Nepom GT, Silver J, Winchester RJ, Peter K Gregersen (1990), "Further DNA sequence microheterogeneity of the HLA-DR4/Dw13 haplotype group: importance of amino acid position 86 of the DR beta 1 chain for T-cell recognition", Human Immunology, 27(4):378-389.
    [abstract]
1989

  1. Peter K Gregersen (1989), "HLA class II polymorphism: implications for genetic susceptibility to autoimmune disease", Laboratory Investigation, 61(1):5-19.

  2. Hurley CK, Peter K Gregersen, Gorski J, Steiner N, Robbins FM, Hartzman R, Johnson AH, Silver J (1989), "The DR3(w18),DQw4 haplotype differs from DR3(w17),DQw2 haplotypes at multiple class II loci", Human Immunology, 25(1):37-50.
    [abstract]

  3. Kao HT, Peter K Gregersen, Tang JC, Takahashi T, Wang CY, Silver J (1989), "Molecular analysis of the HLA class II genes in two DRw6-related haplotypes, DRw13 DQw1 and DRw14 DQw3", Journal of Immunology, 142(5):1743-1747.
    [abstract] [PDF]

  4. Merryman PF, Crapper RM, Lee S, Peter K Gregersen, Winchester RJ (1989), "Class II major histocompatibility complex gene sequences in rheumatoid arthritis. The third diversity regions of both DR beta 1 genes in two DR1, DRw10-positive individuals specify the same inferred amino acid sequence as the DR beta 1 and DR beta 2 genes of a DR4 (Dw14) haplotype", Arthritis & Rheumatism, 32(3):251-258.

  5. Merryman P, Silver J, Peter K Gregersen, Solomon G, Winchester R. (1989), "A novel association of DQ alpha and DQ beta genes in the DRw10 haplotype. Determination of a DQw1 specificity by the DQ beta-chain", Journal of Immunology, 143(6):2068-2073.
    [abstract] [PDF]

  6. Navarrete C, Seki T, Miranda A, Winchester R, Peter K Gregersen (1989), "DNA sequence analysis of the HLA-DRw12 allele", Human Immunology, 25(1):51-58.
    [abstract]